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Mutant Information

Mutant Name	FN2320 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2320 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 7686592 T-C Hetero INTRON
SBS Chr2 22699347 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g220500
SBS Chr3 18050024 C-A Homo INTERGENIC
SBS Chr3 23299949 C-T Homo INTERGENIC
SBS Chr3 23477348 G-A Homo INTERGENIC
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr4 7327441 G-A Homo INTERGENIC
SBS Chr4 16284412 C-T Hetero INTERGENIC
SBS Chr4 17050093 C-A Homo INTERGENIC
SBS Chr4 17050096 C-A Homo INTERGENIC
SBS Chr4 23551193 G-A Homo INTRON
SBS Chr4 26355454 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g188100
SBS Chr4 27956514 C-T Hetero INTERGENIC
SBS Chr4 35951786 T-A Hetero INTERGENIC
SBS Chr5 14209274 G-T Hetero INTERGENIC
SBS Chr5 16877389 G-T Hetero INTERGENIC
SBS Chr5 18521004 A-G Homo INTERGENIC
SBS Chr5 19863758 T-A Homo INTERGENIC
SBS Chr5 27430033 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 17330414 G-A Homo INTERGENIC
SBS Chr6 20148977 C-G Homo INTERGENIC
SBS Chr6 21347301 C-A Homo INTERGENIC
SBS Chr6 24345080 T-A Hetero INTERGENIC
SBS Chr7 825341 T-G Hetero INTRON
SBS Chr7 2791710 G-A Hetero INTRON
SBS Chr7 4029612 G-A Hetero INTERGENIC
SBS Chr7 5953217 C-T Hetero INTRON
SBS Chr7 13705989 T-G Hetero INTERGENIC
SBS Chr7 16333465 T-C Hetero INTERGENIC
SBS Chr7 27898832 G-T Homo INTERGENIC
SBS Chr8 18162901 C-T Hetero INTERGENIC
SBS Chr8 20158460 C-T Hetero INTRON
SBS Chr8 23073554 G-T Hetero UTR_3_PRIME
SBS Chr8 23073555 C-T Hetero UTR_3_PRIME
SBS Chr9 4866972 A-G Homo INTERGENIC
SBS Chr9 18640049 C-T Hetero INTERGENIC
SBS Chr10 7968519 C-T Homo INTERGENIC
SBS Chr10 13117296 G-A Homo INTERGENIC
SBS Chr11 5670572 A-G Hetero INTERGENIC
SBS Chr11 8674872 G-A Homo INTERGENIC
SBS Chr12 4994511 A-C Homo INTERGENIC
SBS Chr12 5017939 T-A Homo INTERGENIC
SBS Chr12 19844256 G-C Hetero INTERGENIC
SBS Chr12 26408403 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4090051 4090057 6
Deletion Chr2 4261683 4261689 6
Deletion Chr12 5303130 5303131 1
Deletion Chr3 6320013 6320018 5
Deletion Chr10 8368924 8368939 15
Deletion Chr3 12008743 12008751 8
Deletion Chr1 12171566 12171579 13
Deletion Chr6 18717319 18717320 1
Deletion Chr2 26853648 26853655 7
Deletion Chr11 27220153 27220160 7
Deletion Chr4 31494001 31574000 79999 11
Deletion Chr2 31994382 31994383 1
Deletion Chr4 32104230 32104232 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28771809 28771813 3
Insertion Chr2 34049387 34049389 1
Insertion Chr4 3580640 3580643 2
Insertion Chr6 2334675 2334678 2
Insertion Chr9 14610309 14610312 2
Insertion Chr11 2521857 2521860 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 11284129 11503393 OsKitaake08g101700
Inversion Chr8 11289175 11503399 OsKitaake08g101700

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12854053 Chr5 26525637 OsKitaake05g235800
Translocation Chr12 12856703 Chr5 26525648 OsKitaake05g235800
Translocation Chr12 26603016 Chr2 4842130 OsKitaake12g221100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	7686592	T-C	Hetero	INTRON
SBS	Chr2	22699347	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g220500
SBS	Chr3	18050024	C-A	Homo	INTERGENIC
SBS	Chr3	23299949	C-T	Homo	INTERGENIC
SBS	Chr3	23477348	G-A	Homo	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr4	7327441	G-A	Homo	INTERGENIC
SBS	Chr4	16284412	C-T	Hetero	INTERGENIC
SBS	Chr4	17050093	C-A	Homo	INTERGENIC
SBS	Chr4	17050096	C-A	Homo	INTERGENIC
SBS	Chr4	23551193	G-A	Homo	INTRON
SBS	Chr4	26355454	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g188100
SBS	Chr4	27956514	C-T	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Hetero	INTERGENIC
SBS	Chr5	14209274	G-T	Hetero	INTERGENIC
SBS	Chr5	16877389	G-T	Hetero	INTERGENIC
SBS	Chr5	18521004	A-G	Homo	INTERGENIC
SBS	Chr5	19863758	T-A	Homo	INTERGENIC
SBS	Chr5	27430033	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	17330414	G-A	Homo	INTERGENIC
SBS	Chr6	20148977	C-G	Homo	INTERGENIC
SBS	Chr6	21347301	C-A	Homo	INTERGENIC
SBS	Chr6	24345080	T-A	Hetero	INTERGENIC
SBS	Chr7	825341	T-G	Hetero	INTRON
SBS	Chr7	2791710	G-A	Hetero	INTRON
SBS	Chr7	4029612	G-A	Hetero	INTERGENIC
SBS	Chr7	5953217	C-T	Hetero	INTRON
SBS	Chr7	13705989	T-G	Hetero	INTERGENIC
SBS	Chr7	16333465	T-C	Hetero	INTERGENIC
SBS	Chr7	27898832	G-T	Homo	INTERGENIC
SBS	Chr8	18162901	C-T	Hetero	INTERGENIC
SBS	Chr8	20158460	C-T	Hetero	INTRON
SBS	Chr8	23073554	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	23073555	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	4866972	A-G	Homo	INTERGENIC
SBS	Chr9	18640049	C-T	Hetero	INTERGENIC
SBS	Chr10	7968519	C-T	Homo	INTERGENIC
SBS	Chr10	13117296	G-A	Homo	INTERGENIC
SBS	Chr11	5670572	A-G	Hetero	INTERGENIC
SBS	Chr11	8674872	G-A	Homo	INTERGENIC
SBS	Chr12	4994511	A-C	Homo	INTERGENIC
SBS	Chr12	5017939	T-A	Homo	INTERGENIC
SBS	Chr12	19844256	G-C	Hetero	INTERGENIC
SBS	Chr12	26408403	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4090051	4090057	6
Deletion	Chr2	4261683	4261689	6
Deletion	Chr12	5303130	5303131	1
Deletion	Chr3	6320013	6320018	5
Deletion	Chr10	8368924	8368939	15
Deletion	Chr3	12008743	12008751	8
Deletion	Chr1	12171566	12171579	13
Deletion	Chr6	18717319	18717320	1
Deletion	Chr2	26853648	26853655	7
Deletion	Chr11	27220153	27220160	7
Deletion	Chr4	31494001	31574000	79999	11
Deletion	Chr2	31994382	31994383	1
Deletion	Chr4	32104230	32104232	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	11284129	11503393	OsKitaake08g101700
Inversion	Chr8	11289175	11503399	OsKitaake08g101700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes