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Mutant Information

Mutant Name	FN2321 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2321 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3708543 G-A Homo INTERGENIC
SBS Chr1 6704045 C-A Homo INTERGENIC
SBS Chr1 28769840 G-T Homo INTRON
SBS Chr1 42374179 C-T Homo INTERGENIC
SBS Chr2 13632678 A-G Homo INTERGENIC
SBS Chr2 25171148 C-T Homo INTERGENIC
SBS Chr2 25171149 C-T Homo INTERGENIC
SBS Chr2 32405388 A-G Hetero UTR_3_PRIME
SBS Chr3 19581238 G-T Hetero INTERGENIC
SBS Chr3 25818690 C-T Homo INTERGENIC
SBS Chr3 26129656 A-C Homo INTERGENIC
SBS Chr4 8226164 T-C Hetero INTERGENIC
SBS Chr5 10221560 G-A Hetero INTERGENIC
SBS Chr5 29791409 T-A Homo INTERGENIC
SBS Chr6 15921500 C-T Homo INTERGENIC
SBS Chr6 22376880 G-A Hetero INTERGENIC
SBS Chr6 26208516 T-A Hetero INTRON
SBS Chr7 6420979 A-G Homo INTERGENIC
SBS Chr7 12524633 A-T Hetero INTERGENIC
SBS Chr7 12524634 A-T Hetero INTERGENIC
SBS Chr7 14132654 T-C Hetero INTERGENIC
SBS Chr7 26676992 T-C Hetero INTERGENIC
SBS Chr8 3787873 C-T Hetero INTERGENIC
SBS Chr8 27475125 G-A Hetero INTERGENIC
SBS Chr9 794717 A-G Hetero INTERGENIC
SBS Chr9 2952075 C-T Hetero INTERGENIC
SBS Chr9 11240068 G-A Hetero INTERGENIC
SBS Chr9 17818477 G-A Homo INTERGENIC
SBS Chr9 17901724 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2987496 2987498 2
Deletion Chr9 2991476 2991477 1
Deletion Chr10 9255161 9255167 6
Deletion Chr9 15298300 15298305 5
Deletion Chr10 16533323 16533336 13
Deletion Chr8 17056612 17056614 2
Deletion Chr10 18485628 18485635 7
Deletion Chr9 18813336 18813353 17
Deletion Chr12 20826685 20826693 8
Deletion Chr12 25394515 25394517 2
Deletion Chr7 27219405 27219411 6
Deletion Chr6 27449001 27482000 32999 6
Deletion Chr7 28408001 28419000 10999 OsKitaake07g269600
Deletion Chr1 33249943 33249947 4
Deletion Chr2 35945848 35945850 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2897286 2897292 5
Insertion Chr6 26810422 26810425 2
Insertion Chr7 534130 534133 2

Inversions: 10

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 5354896 5427936
Inversion Chr10 5354904 5427934
Inversion Chr4 10564185 10567154
Inversion Chr4 10565015 10567157
Inversion Chr5 14781440 15259825 OsKitaake05g112800
Inversion Chr5 14781448 15259826 OsKitaake05g112800
Inversion Chr8 14883352 15631788 OsKitaake08g116600
Inversion Chr8 14918063 15631789 OsKitaake08g117000
Inversion Chr7 28319423 28408244 OsKitaake07g269600
Inversion Chr7 28319436 28419442 OsKitaake07g267900

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1186874 Chr4 23699946 OsKitaake09g007200
Translocation Chr7 4105421 Chr1 28530936 OsKitaake07g052200
Translocation Chr7 4107600 Chr1 28530939
Translocation Chr7 16838800 Chr2 33399622 OsKitaake02g344700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3708543	G-A	Homo	INTERGENIC
SBS	Chr1	6704045	C-A	Homo	INTERGENIC
SBS	Chr1	28769840	G-T	Homo	INTRON
SBS	Chr1	42374179	C-T	Homo	INTERGENIC
SBS	Chr2	13632678	A-G	Homo	INTERGENIC
SBS	Chr2	25171148	C-T	Homo	INTERGENIC
SBS	Chr2	25171149	C-T	Homo	INTERGENIC
SBS	Chr2	32405388	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	19581238	G-T	Hetero	INTERGENIC
SBS	Chr3	25818690	C-T	Homo	INTERGENIC
SBS	Chr3	26129656	A-C	Homo	INTERGENIC
SBS	Chr4	8226164	T-C	Hetero	INTERGENIC
SBS	Chr5	10221560	G-A	Hetero	INTERGENIC
SBS	Chr5	29791409	T-A	Homo	INTERGENIC
SBS	Chr6	15921500	C-T	Homo	INTERGENIC
SBS	Chr6	22376880	G-A	Hetero	INTERGENIC
SBS	Chr6	26208516	T-A	Hetero	INTRON
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	12524633	A-T	Hetero	INTERGENIC
SBS	Chr7	12524634	A-T	Hetero	INTERGENIC
SBS	Chr7	14132654	T-C	Hetero	INTERGENIC
SBS	Chr7	26676992	T-C	Hetero	INTERGENIC
SBS	Chr8	3787873	C-T	Hetero	INTERGENIC
SBS	Chr8	27475125	G-A	Hetero	INTERGENIC
SBS	Chr9	794717	A-G	Hetero	INTERGENIC
SBS	Chr9	2952075	C-T	Hetero	INTERGENIC
SBS	Chr9	11240068	G-A	Hetero	INTERGENIC
SBS	Chr9	17818477	G-A	Homo	INTERGENIC
SBS	Chr9	17901724	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2987496	2987498	2
Deletion	Chr9	2991476	2991477	1
Deletion	Chr10	9255161	9255167	6
Deletion	Chr9	15298300	15298305	5
Deletion	Chr10	16533323	16533336	13
Deletion	Chr8	17056612	17056614	2
Deletion	Chr10	18485628	18485635	7
Deletion	Chr9	18813336	18813353	17
Deletion	Chr12	20826685	20826693	8
Deletion	Chr12	25394515	25394517	2
Deletion	Chr7	27219405	27219411	6
Deletion	Chr6	27449001	27482000	32999	6
Deletion	Chr7	28408001	28419000	10999	OsKitaake07g269600
Deletion	Chr1	33249943	33249947	4
Deletion	Chr2	35945848	35945850	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5354896	5427936
Inversion	Chr10	5354904	5427934
Inversion	Chr4	10564185	10567154
Inversion	Chr4	10565015	10567157
Inversion	Chr5	14781440	15259825	OsKitaake05g112800
Inversion	Chr5	14781448	15259826	OsKitaake05g112800
Inversion	Chr8	14883352	15631788	OsKitaake08g116600
Inversion	Chr8	14918063	15631789	OsKitaake08g117000
Inversion	Chr7	28319423	28408244	OsKitaake07g269600
Inversion	Chr7	28319436	28419442	OsKitaake07g267900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes