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Mutant Information

Mutant Name	FN2322 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2322 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14647409 G-A Hetero INTERGENIC
SBS Chr1 17766210 G-T Hetero INTRON
SBS Chr1 33562129 T-A Homo INTRON
SBS Chr2 32861270 C-A Homo UTR_3_PRIME
SBS Chr3 12854584 C-T Hetero UTR_3_PRIME
SBS Chr3 35363134 C-G Homo INTRON
SBS Chr4 10601097 T-A Homo INTERGENIC
SBS Chr4 11479849 C-T Hetero INTERGENIC
SBS Chr4 11872981 A-C Hetero INTERGENIC
SBS Chr4 12389064 A-G Hetero INTRON
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr5 5456487 C-A Hetero INTERGENIC
SBS Chr5 9168347 C-T Hetero INTERGENIC
SBS Chr5 20784272 G-A Hetero INTRON
SBS Chr5 29358106 G-A Homo UTR_3_PRIME
SBS Chr6 6772659 A-C Homo INTERGENIC
SBS Chr6 8673101 T-A Homo INTERGENIC
SBS Chr6 18872560 G-A Homo INTERGENIC
SBS Chr6 19504716 T-C Homo INTERGENIC
SBS Chr6 23784895 T-C Hetero INTERGENIC
SBS Chr6 30415180 G-A Homo INTERGENIC
SBS Chr7 19922513 G-C Hetero INTERGENIC
SBS Chr7 29292148 T-G Homo UTR_3_PRIME
SBS Chr8 344250 C-T Hetero INTERGENIC
SBS Chr8 364887 A-G Hetero INTRON
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 8861668 G-T Hetero STOP_GAINED OsKitaake08g081400
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr8 20975965 T-G Homo INTRON
SBS Chr8 21201761 C-A Homo INTERGENIC
SBS Chr8 26584076 C-T Homo INTRON
SBS Chr9 7126473 G-T Hetero INTERGENIC
SBS Chr10 4700465 A-G Homo INTERGENIC
SBS Chr10 6593163 T-G Hetero INTERGENIC
SBS Chr10 22608935 T-A Homo UTR_3_PRIME
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 16244827 G-C Hetero INTERGENIC
SBS Chr11 16915216 G-A Homo INTERGENIC
SBS Chr11 25057682 C-T Hetero INTERGENIC
SBS Chr12 9949303 C-T Hetero INTERGENIC
SBS Chr12 9949304 C-T Hetero INTERGENIC
SBS Chr12 12592674 C-T Hetero INTERGENIC
SBS Chr12 17651212 T-C Hetero INTRON
SBS Chr12 17824339 A-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1242996 1242997 1
Deletion Chr12 3654903 3654909 6
Deletion Chr12 4204876 4204880 4
Deletion Chr4 5125321 5125323 2
Deletion Chr10 13926300 13926302 2
Deletion Chr7 13948251 13948255 4
Deletion Chr2 14226595 14226596 1
Deletion Chr10 14772848 14772850 2
Deletion Chr3 15163391 15163401 10
Deletion Chr6 22789609 22789610 1
Deletion Chr8 23291527 23291528 1
Deletion Chr2 28100642 28100643 1
Deletion Chr1 30444899 30445096 197

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr2 158606 158612 5
Insertion Chr3 29484610 29484615 4
Insertion Chr4 17314186 17314189 2
Insertion Chr7 18398048 18398051 2
Insertion Chr11 12530004 12530006 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17931122 Chr1 43885318 OsKitaake01g488800
Translocation Chr9 17931320 Chr1 43885301 OsKitaake01g488800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14647409	G-A	Hetero	INTERGENIC
SBS	Chr1	17766210	G-T	Hetero	INTRON
SBS	Chr1	33562129	T-A	Homo	INTRON
SBS	Chr2	32861270	C-A	Homo	UTR_3_PRIME
SBS	Chr3	12854584	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	35363134	C-G	Homo	INTRON
SBS	Chr4	10601097	T-A	Homo	INTERGENIC
SBS	Chr4	11479849	C-T	Hetero	INTERGENIC
SBS	Chr4	11872981	A-C	Hetero	INTERGENIC
SBS	Chr4	12389064	A-G	Hetero	INTRON
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr5	5456487	C-A	Hetero	INTERGENIC
SBS	Chr5	9168347	C-T	Hetero	INTERGENIC
SBS	Chr5	20784272	G-A	Hetero	INTRON
SBS	Chr5	29358106	G-A	Homo	UTR_3_PRIME
SBS	Chr6	6772659	A-C	Homo	INTERGENIC
SBS	Chr6	8673101	T-A	Homo	INTERGENIC
SBS	Chr6	18872560	G-A	Homo	INTERGENIC
SBS	Chr6	19504716	T-C	Homo	INTERGENIC
SBS	Chr6	23784895	T-C	Hetero	INTERGENIC
SBS	Chr6	30415180	G-A	Homo	INTERGENIC
SBS	Chr7	19922513	G-C	Hetero	INTERGENIC
SBS	Chr7	29292148	T-G	Homo	UTR_3_PRIME
SBS	Chr8	344250	C-T	Hetero	INTERGENIC
SBS	Chr8	364887	A-G	Hetero	INTRON
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	8861668	G-T	Hetero	STOP_GAINED	OsKitaake08g081400
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr8	20975965	T-G	Homo	INTRON
SBS	Chr8	21201761	C-A	Homo	INTERGENIC
SBS	Chr8	26584076	C-T	Homo	INTRON
SBS	Chr9	7126473	G-T	Hetero	INTERGENIC
SBS	Chr10	4700465	A-G	Homo	INTERGENIC
SBS	Chr10	6593163	T-G	Hetero	INTERGENIC
SBS	Chr10	22608935	T-A	Homo	UTR_3_PRIME
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	16244827	G-C	Hetero	INTERGENIC
SBS	Chr11	16915216	G-A	Homo	INTERGENIC
SBS	Chr11	25057682	C-T	Hetero	INTERGENIC
SBS	Chr12	9949303	C-T	Hetero	INTERGENIC
SBS	Chr12	9949304	C-T	Hetero	INTERGENIC
SBS	Chr12	12592674	C-T	Hetero	INTERGENIC
SBS	Chr12	17651212	T-C	Hetero	INTRON
SBS	Chr12	17824339	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1242996	1242997	1
Deletion	Chr12	3654903	3654909	6
Deletion	Chr12	4204876	4204880	4
Deletion	Chr4	5125321	5125323	2
Deletion	Chr10	13926300	13926302	2
Deletion	Chr7	13948251	13948255	4
Deletion	Chr2	14226595	14226596	1
Deletion	Chr10	14772848	14772850	2
Deletion	Chr3	15163391	15163401	10
Deletion	Chr6	22789609	22789610	1
Deletion	Chr8	23291527	23291528	1
Deletion	Chr2	28100642	28100643	1
Deletion	Chr1	30444899	30445096	197

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17931122	Chr1	43885318	OsKitaake01g488800
Translocation	Chr9	17931320	Chr1	43885301	OsKitaake01g488800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes