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Mutant Information

Mutant Name	FN2323 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2323 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 41844630 G-A Hetero INTERGENIC
SBS Chr2 5594922 A-T Homo UTR_3_PRIME
SBS Chr2 25667913 C-T Homo INTERGENIC
SBS Chr2 34205326 G-A Hetero UTR_5_PRIME
SBS Chr2 35505042 C-T Hetero INTERGENIC
SBS Chr3 777623 G-A Homo STOP_GAINED OsKitaake03g012200
SBS Chr3 3679200 G-A Hetero INTERGENIC
SBS Chr3 4607504 C-T Hetero INTERGENIC
SBS Chr3 13004240 T-G Hetero INTERGENIC
SBS Chr3 21379714 G-A Homo INTRON
SBS Chr3 37738535 A-C Homo NON_SYNONYMOUS_CODING OsKitaake03g424000
SBS Chr4 9997672 C-T Hetero INTERGENIC
SBS Chr4 13766712 G-C Hetero INTERGENIC
SBS Chr4 32093646 A-G Hetero INTRON
SBS Chr5 16995885 A-G Hetero INTERGENIC
SBS Chr5 17623769 T-C Homo SYNONYMOUS_CODING
SBS Chr5 25462148 C-T Hetero INTERGENIC
SBS Chr6 16217593 C-T Hetero INTRON
SBS Chr8 7106201 G-A Hetero INTERGENIC
SBS Chr8 15972719 T-C Homo INTERGENIC
SBS Chr9 5897785 T-A Hetero INTRON
SBS Chr10 1196153 C-G Hetero UTR_3_PRIME
SBS Chr11 8966386 C-G Homo INTERGENIC
SBS Chr11 9202004 C-T Hetero INTERGENIC
SBS Chr11 12727385 G-A Homo INTERGENIC
SBS Chr11 18420676 G-A Homo INTERGENIC
SBS Chr11 28746082 C-T Homo INTERGENIC
SBS Chr12 9533476 A-T Hetero INTERGENIC
SBS Chr12 14134632 A-T Hetero INTERGENIC
SBS Chr12 14134637 A-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 610984 610986 2
Deletion Chr10 662724 662726 2
Deletion Chr9 687087 687098 11
Deletion Chr2 3924101 3924104 3
Deletion Chr7 4721710 4721712 2
Deletion Chr3 7148365 7148369 4
Deletion Chr10 8543515 8543523 8
Deletion Chr11 9618280 9618282 2
Deletion Chr10 10517211 10517212 1
Deletion Chr12 10793987 10793995 8
Deletion Chr11 12310807 12310808 1
Deletion Chr6 13088670 13088686 16
Deletion Chr11 13704654 13704670 16
Deletion Chr8 15510257 15510259 2
Deletion Chr6 18765365 18765372 7
Deletion Chr6 18930349 18930350 1
Deletion Chr8 20313955 20313970 15
Deletion Chr3 21776296 21776302 6 OsKitaake03g239000
Deletion Chr1 22721018 22721020 2
Deletion Chr5 22829883 22829887 4
Deletion Chr8 23481381 23481383 2
Deletion Chr3 24225361 24225367 6
Deletion Chr1 26353716 26353726 10
Deletion Chr8 29295832 29295836 4
Deletion Chr1 29807159 29807163 4
Deletion Chr1 38103518 38103519 1
Deletion Chr1 38104318 38104324 6
Deletion Chr1 40758194 40758195 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 19421434 19421437 2
Insertion Chr1 21639034 21639037 2
Insertion Chr1 25903566 25903569 2
Insertion Chr1 30573309 30573313 3
Insertion Chr3 9079203 9079206 2
Insertion Chr4 22036876 22036879 2
Insertion Chr7 12904772 12904779 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 12996935 13067848
Inversion Chr4 12996939 13067849

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	41844630	G-A	Hetero	INTERGENIC
SBS	Chr2	5594922	A-T	Homo	UTR_3_PRIME
SBS	Chr2	25667913	C-T	Homo	INTERGENIC
SBS	Chr2	34205326	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	35505042	C-T	Hetero	INTERGENIC
SBS	Chr3	777623	G-A	Homo	STOP_GAINED	OsKitaake03g012200
SBS	Chr3	3679200	G-A	Hetero	INTERGENIC
SBS	Chr3	4607504	C-T	Hetero	INTERGENIC
SBS	Chr3	13004240	T-G	Hetero	INTERGENIC
SBS	Chr3	21379714	G-A	Homo	INTRON
SBS	Chr3	37738535	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g424000
SBS	Chr4	9997672	C-T	Hetero	INTERGENIC
SBS	Chr4	13766712	G-C	Hetero	INTERGENIC
SBS	Chr4	32093646	A-G	Hetero	INTRON
SBS	Chr5	16995885	A-G	Hetero	INTERGENIC
SBS	Chr5	17623769	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr5	25462148	C-T	Hetero	INTERGENIC
SBS	Chr6	16217593	C-T	Hetero	INTRON
SBS	Chr8	7106201	G-A	Hetero	INTERGENIC
SBS	Chr8	15972719	T-C	Homo	INTERGENIC
SBS	Chr9	5897785	T-A	Hetero	INTRON
SBS	Chr10	1196153	C-G	Hetero	UTR_3_PRIME
SBS	Chr11	8966386	C-G	Homo	INTERGENIC
SBS	Chr11	9202004	C-T	Hetero	INTERGENIC
SBS	Chr11	12727385	G-A	Homo	INTERGENIC
SBS	Chr11	18420676	G-A	Homo	INTERGENIC
SBS	Chr11	28746082	C-T	Homo	INTERGENIC
SBS	Chr12	9533476	A-T	Hetero	INTERGENIC
SBS	Chr12	14134632	A-T	Hetero	INTERGENIC
SBS	Chr12	14134637	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	610984	610986	2
Deletion	Chr10	662724	662726	2
Deletion	Chr9	687087	687098	11
Deletion	Chr2	3924101	3924104	3
Deletion	Chr7	4721710	4721712	2
Deletion	Chr3	7148365	7148369	4
Deletion	Chr10	8543515	8543523	8
Deletion	Chr11	9618280	9618282	2
Deletion	Chr10	10517211	10517212	1
Deletion	Chr12	10793987	10793995	8
Deletion	Chr11	12310807	12310808	1
Deletion	Chr6	13088670	13088686	16
Deletion	Chr11	13704654	13704670	16
Deletion	Chr8	15510257	15510259	2
Deletion	Chr6	18765365	18765372	7
Deletion	Chr6	18930349	18930350	1
Deletion	Chr8	20313955	20313970	15
Deletion	Chr3	21776296	21776302	6	OsKitaake03g239000
Deletion	Chr1	22721018	22721020	2
Deletion	Chr5	22829883	22829887	4
Deletion	Chr8	23481381	23481383	2
Deletion	Chr3	24225361	24225367	6
Deletion	Chr1	26353716	26353726	10
Deletion	Chr8	29295832	29295836	4
Deletion	Chr1	29807159	29807163	4
Deletion	Chr1	38103518	38103519	1
Deletion	Chr1	38104318	38104324	6
Deletion	Chr1	40758194	40758195	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12996935	13067848
Inversion	Chr4	12996939	13067849

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes