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Mutant Information

Mutant Name	FN2324 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2324 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1840104	A-C	Hetero	INTERGENIC
SBS	Chr1	6006501	G-A	Hetero	INTRON
SBS	Chr1	12331814	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	13714778	G-A	Hetero	INTRON
SBS	Chr1	15682528	A-T	Hetero	INTRON
SBS	Chr1	17474804	G-A	Hetero	INTERGENIC
SBS	Chr1	22126960	G-A	Hetero	INTERGENIC
SBS	Chr1	25726117	G-T	Homo	INTERGENIC
SBS	Chr1	31371755	G-A	Homo	INTERGENIC
SBS	Chr1	34192264	G-A	Homo	INTERGENIC
SBS	Chr3	5985225	G-A	Homo	UTR_3_PRIME
SBS	Chr3	8857556	G-A	Homo	INTERGENIC
SBS	Chr3	11795179	G-A	Hetero	START_GAINED
SBS	Chr3	16147082	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g206000
SBS	Chr3	18858425	G-A	Hetero	INTERGENIC
SBS	Chr4	6376896	T-A	Hetero	INTRON
SBS	Chr4	6376897	T-C	Hetero	INTRON
SBS	Chr4	7076042	C-A	Hetero	INTERGENIC
SBS	Chr4	16468542	G-A	Hetero	INTERGENIC
SBS	Chr4	30499163	G-A	Homo	INTERGENIC
SBS	Chr5	8449115	G-T	Hetero	INTERGENIC
SBS	Chr5	12168521	C-A	Hetero	INTERGENIC
SBS	Chr6	8646559	C-G	Hetero	INTERGENIC
SBS	Chr6	15307750	C-A	Homo	INTERGENIC
SBS	Chr6	20889205	T-C	Homo	INTERGENIC
SBS	Chr6	25062406	T-A	Hetero	INTERGENIC
SBS	Chr6	25630710	T-A	Hetero	INTERGENIC
SBS	Chr7	1181891	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	6363124	C-T	Hetero	INTERGENIC
SBS	Chr7	21546495	C-A	Hetero	INTERGENIC
SBS	Chr7	25255414	T-C	Hetero	INTERGENIC
SBS	Chr8	6796367	G-T	Hetero	INTERGENIC
SBS	Chr8	21079254	G-A	Hetero	INTERGENIC
SBS	Chr8	21079256	T-C	Hetero	INTERGENIC
SBS	Chr10	1805649	C-A	Hetero	INTRON
SBS	Chr10	8180836	G-T	Hetero	INTERGENIC
SBS	Chr10	12260897	G-A	Hetero	INTRON
SBS	Chr11	5592250	G-T	Hetero	INTERGENIC
SBS	Chr12	10712558	G-A	Hetero	INTERGENIC
SBS	Chr12	14278779	C-T	Hetero	INTERGENIC
SBS	Chr12	20723896	A-C	Homo	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2323000	2323002	2
Deletion	Chr7	3572001	3639000	66999	8
Deletion	Chr7	3805700	3805706	6
Deletion	Chr11	4789001	5159000	369999	31
Deletion	Chr11	5272529	5272531	2
Deletion	Chr4	10716001	10876000	159999	2
Deletion	Chr7	17531007	17531009	2
Deletion	Chr6	21931216	21931223	7	OsKitaake06g192900
Deletion	Chr5	23458001	23470000	11999
Deletion	Chr5	24812057	24812058	1
Deletion	Chr5	27177941	27177954	13	OsKitaake05g245400
Deletion	Chr1	27647833	27647860	27
Deletion	Chr4	36421001	36441000	19999	4
Deletion	Chr1	42817287	42817293	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	5361072	5361075	2
Insertion	Chr1	6483230	6483233	2
Insertion	Chr7	740671	740674	2
Insertion	Chr7	23205958	23205963	4

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4482797	Chr5	23457999
Translocation	Chr7	4482808	Chr5	23457703
Translocation	Chr11	5161819	Chr6	30035658	2
Translocation	Chr11	5243706	Chr4	10911282	OsKitaake11g066000
Translocation	Chr7	6014864	Chr3	22848461
Translocation	Chr7	6015364	Chr3	22848449
Translocation	Chr7	6632601	Chr4	5649395
Translocation	Chr7	6637541	Chr4	5024690	OsKitaake04g023301
Translocation	Chr3	11243119	Chr1	17469060	2
Translocation	Chr3	11243125	Chr1	17475472	OsKitaake03g154400
Translocation	Chr4	12906290	Chr1	17475480
Translocation	Chr4	12906298	Chr1	17532271
Translocation	Chr6	30035656	Chr4	10939797	OsKitaake06g281300