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Mutant Information

Mutant Name	FN2325 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2325 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7793123 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g097600
SBS Chr1 7793124 T-A Hetero STOP_GAINED OsKitaake01g097600
SBS Chr1 15563742 T-G Hetero INTERGENIC
SBS Chr1 17087823 T-A Hetero INTERGENIC
SBS Chr1 19236608 G-A Hetero INTERGENIC
SBS Chr1 40835903 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g444400
SBS Chr2 10735574 C-A Hetero INTERGENIC
SBS Chr2 13700361 T-A Homo INTERGENIC
SBS Chr2 20593521 G-T Hetero INTERGENIC
SBS Chr2 20603967 G-A Hetero INTERGENIC
SBS Chr2 22118968 C-A Hetero INTERGENIC
SBS Chr3 16078873 G-A Homo INTERGENIC
SBS Chr3 27351527 C-T Hetero INTERGENIC
SBS Chr4 8268875 C-T Homo INTERGENIC
SBS Chr4 31622711 G-A Homo INTERGENIC
SBS Chr6 1315512 A-C Hetero INTERGENIC
SBS Chr6 14396937 G-T Homo INTERGENIC
SBS Chr6 19010787 G-T Hetero INTERGENIC
SBS Chr7 9916181 C-T Hetero INTRON
SBS Chr7 10037429 T-C Hetero INTERGENIC
SBS Chr7 10419407 T-C Hetero INTERGENIC
SBS Chr7 10419408 A-C Hetero INTERGENIC
SBS Chr7 22580156 G-A Hetero INTERGENIC
SBS Chr7 29111020 G-C Hetero INTERGENIC
SBS Chr8 11461601 C-T Hetero INTERGENIC
SBS Chr8 16735889 A-T Homo INTERGENIC
SBS Chr9 1377944 C-T Hetero INTERGENIC
SBS Chr9 1699690 A-C Homo INTERGENIC
SBS Chr9 7321380 C-T Homo INTERGENIC
SBS Chr9 14355361 G-A Hetero INTERGENIC
SBS Chr10 8638342 T-C Homo INTERGENIC
SBS Chr10 17408491 T-G Homo INTERGENIC
SBS Chr11 3810802 C-T Hetero INTERGENIC
SBS Chr11 11501007 G-C Hetero INTERGENIC
SBS Chr11 23290200 C-A Hetero UTR_5_PRIME
SBS Chr12 14176576 G-A Homo INTERGENIC
SBS Chr12 14947340 C-A Hetero INTERGENIC
SBS Chr12 19029404 T-G Hetero INTRON

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4326395 4326397 2
Deletion Chr9 5725293 5725298 5
Deletion Chr5 6599818 6599820 2
Deletion Chr4 12240463 12240464 1
Deletion Chr5 21660878 21660885 7
Deletion Chr8 24890236 24890248 12
Deletion Chr8 27854722 27854731 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 18579929 18579933 3

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1159468 1241578 2
Inversion Chr5 1159481 1242223 2
Inversion Chr9 6522354 6636931
Inversion Chr3 11192793 11194686 OsKitaake03g153800
Inversion Chr3 11192807 11194691 OsKitaake03g153800
Inversion Chr4 21274907 21342246 2
Inversion Chr4 21274910 21342257 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6525363 Chr6 26889247 OsKitaake06g240700
Translocation Chr8 24874940 Chr6 9851042

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7793123	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g097600
SBS	Chr1	7793124	T-A	Hetero	STOP_GAINED	OsKitaake01g097600
SBS	Chr1	15563742	T-G	Hetero	INTERGENIC
SBS	Chr1	17087823	T-A	Hetero	INTERGENIC
SBS	Chr1	19236608	G-A	Hetero	INTERGENIC
SBS	Chr1	40835903	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g444400
SBS	Chr2	10735574	C-A	Hetero	INTERGENIC
SBS	Chr2	13700361	T-A	Homo	INTERGENIC
SBS	Chr2	20593521	G-T	Hetero	INTERGENIC
SBS	Chr2	20603967	G-A	Hetero	INTERGENIC
SBS	Chr2	22118968	C-A	Hetero	INTERGENIC
SBS	Chr3	16078873	G-A	Homo	INTERGENIC
SBS	Chr3	27351527	C-T	Hetero	INTERGENIC
SBS	Chr4	8268875	C-T	Homo	INTERGENIC
SBS	Chr4	31622711	G-A	Homo	INTERGENIC
SBS	Chr6	1315512	A-C	Hetero	INTERGENIC
SBS	Chr6	14396937	G-T	Homo	INTERGENIC
SBS	Chr6	19010787	G-T	Hetero	INTERGENIC
SBS	Chr7	9916181	C-T	Hetero	INTRON
SBS	Chr7	10037429	T-C	Hetero	INTERGENIC
SBS	Chr7	10419407	T-C	Hetero	INTERGENIC
SBS	Chr7	10419408	A-C	Hetero	INTERGENIC
SBS	Chr7	22580156	G-A	Hetero	INTERGENIC
SBS	Chr7	29111020	G-C	Hetero	INTERGENIC
SBS	Chr8	11461601	C-T	Hetero	INTERGENIC
SBS	Chr8	16735889	A-T	Homo	INTERGENIC
SBS	Chr9	1377944	C-T	Hetero	INTERGENIC
SBS	Chr9	1699690	A-C	Homo	INTERGENIC
SBS	Chr9	7321380	C-T	Homo	INTERGENIC
SBS	Chr9	14355361	G-A	Hetero	INTERGENIC
SBS	Chr10	8638342	T-C	Homo	INTERGENIC
SBS	Chr10	17408491	T-G	Homo	INTERGENIC
SBS	Chr11	3810802	C-T	Hetero	INTERGENIC
SBS	Chr11	11501007	G-C	Hetero	INTERGENIC
SBS	Chr11	23290200	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	14176576	G-A	Homo	INTERGENIC
SBS	Chr12	14947340	C-A	Hetero	INTERGENIC
SBS	Chr12	19029404	T-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4326395	4326397	2
Deletion	Chr9	5725293	5725298	5
Deletion	Chr5	6599818	6599820	2
Deletion	Chr4	12240463	12240464	1
Deletion	Chr5	21660878	21660885	7
Deletion	Chr8	24890236	24890248	12
Deletion	Chr8	27854722	27854731	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1159468	1241578	2
Inversion	Chr5	1159481	1242223	2
Inversion	Chr9	6522354	6636931
Inversion	Chr3	11192793	11194686	OsKitaake03g153800
Inversion	Chr3	11192807	11194691	OsKitaake03g153800
Inversion	Chr4	21274907	21342246	2
Inversion	Chr4	21274910	21342257	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes