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Mutant Information

Mutant Name	FN2326 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2326 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 38068756 T-A Hetero UTR_3_PRIME
SBS Chr2 4596330 G-A Homo INTRON
SBS Chr2 5029323 T-A Hetero INTRON
SBS Chr2 10510898 A-G Hetero INTERGENIC
SBS Chr2 17095097 T-C Hetero INTERGENIC
SBS Chr3 19344894 A-C Hetero INTERGENIC
SBS Chr3 19344895 T-A Hetero INTERGENIC
SBS Chr4 1634251 T-A Homo INTERGENIC
SBS Chr4 8112600 C-T Homo INTERGENIC
SBS Chr4 18533264 T-C Hetero INTERGENIC
SBS Chr4 32655775 G-A Hetero INTERGENIC
SBS Chr4 32751816 T-A Hetero INTERGENIC
SBS Chr5 6855192 G-T Hetero INTERGENIC
SBS Chr5 21891333 G-A Homo INTERGENIC
SBS Chr6 1354860 G-T Hetero INTERGENIC
SBS Chr6 2466160 C-T Hetero INTERGENIC
SBS Chr6 5007443 T-C Hetero UTR_5_PRIME
SBS Chr6 9011682 T-A Hetero INTERGENIC
SBS Chr6 14040142 G-C Hetero INTERGENIC
SBS Chr6 23019153 G-A Hetero INTERGENIC
SBS Chr6 27504077 G-T Hetero INTRON
SBS Chr6 27504078 C-T Hetero INTRON
SBS Chr7 11350973 C-T Hetero INTERGENIC
SBS Chr10 3109683 A-G Hetero INTERGENIC
SBS Chr10 19028647 C-T Hetero INTERGENIC
SBS Chr10 19698094 G-A Hetero INTERGENIC
SBS Chr11 12313883 C-G Hetero INTRON
SBS Chr11 14052509 C-T Hetero INTRON
SBS Chr11 14052510 A-C Hetero INTRON
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr12 5030258 G-A Hetero INTERGENIC
SBS Chr12 8192194 G-A Hetero INTERGENIC
SBS Chr12 13619846 T-A Hetero INTERGENIC
SBS Chr12 13963865 G-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1495273 1495277 4
Deletion Chr6 3279667 3279668 1
Deletion Chr11 4242312 4242313 1 OsKitaake11g057000
Deletion Chr4 5801246 5801247 1
Deletion Chr4 8802085 8802094 9
Deletion Chr7 9525418 9525419 1
Deletion Chr1 11274831 11274856 25
Deletion Chr9 12175001 12191000 15999 OsKitaake09g078900
Deletion Chr6 12911425 12911427 2
Deletion Chr10 17343540 17343541 1
Deletion Chr6 19474967 19474973 6
Deletion Chr12 22294779 22294814 35
Deletion Chr3 22972725 22972728 3
Deletion Chr3 23419542 23419544 2
Deletion Chr7 24002001 24077000 74999 9
Deletion Chr8 26075001 26156000 80999 11
Deletion Chr7 27027779 27027811 32
Deletion Chr7 27842722 27842737 15
Deletion Chr1 31470693 31470709 16 OsKitaake01g315800
Deletion Chr1 32584823 32584830 7
Deletion Chr1 35601279 35601280 1
Deletion Chr1 39426653 39426654 1 OsKitaake01g425000

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13239840 13239843 2
Insertion Chr3 18818033 18818037 3
Insertion Chr3 36082270 36082276 5
Insertion Chr5 13270833 13270837 3
Insertion Chr6 30783501 30783504 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3975365 4903054 OsKitaake05g047900
Inversion Chr8 26154716 26580790 OsKitaake08g208200
Inversion Chr8 26235915 26580782

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8638250 Chr1 35040343 OsKitaake01g369700
Translocation Chr12 8639315 Chr1 35040326 OsKitaake01g369700
Translocation Chr6 8979370 Chr4 10401557 2
Translocation Chr7 9693756 Chr5 4506445
Translocation Chr7 24004664 Chr6 27458886 OsKitaake06g248100
Translocation Chr7 24072789 Chr6 27459473 2
Translocation Chr11 25261066 Chr6 27459475 OsKitaake06g248100
Translocation Chr11 25262443 Chr6 27458883 OsKitaake06g248100
Translocation Chr4 25510929 Chr1 16138670 OsKitaake04g175550
Translocation Chr4 25511038 Chr1 43701074 OsKitaake04g175550

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38068756	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	4596330	G-A	Homo	INTRON
SBS	Chr2	5029323	T-A	Hetero	INTRON
SBS	Chr2	10510898	A-G	Hetero	INTERGENIC
SBS	Chr2	17095097	T-C	Hetero	INTERGENIC
SBS	Chr3	19344894	A-C	Hetero	INTERGENIC
SBS	Chr3	19344895	T-A	Hetero	INTERGENIC
SBS	Chr4	1634251	T-A	Homo	INTERGENIC
SBS	Chr4	8112600	C-T	Homo	INTERGENIC
SBS	Chr4	18533264	T-C	Hetero	INTERGENIC
SBS	Chr4	32655775	G-A	Hetero	INTERGENIC
SBS	Chr4	32751816	T-A	Hetero	INTERGENIC
SBS	Chr5	6855192	G-T	Hetero	INTERGENIC
SBS	Chr5	21891333	G-A	Homo	INTERGENIC
SBS	Chr6	1354860	G-T	Hetero	INTERGENIC
SBS	Chr6	2466160	C-T	Hetero	INTERGENIC
SBS	Chr6	5007443	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	9011682	T-A	Hetero	INTERGENIC
SBS	Chr6	14040142	G-C	Hetero	INTERGENIC
SBS	Chr6	23019153	G-A	Hetero	INTERGENIC
SBS	Chr6	27504077	G-T	Hetero	INTRON
SBS	Chr6	27504078	C-T	Hetero	INTRON
SBS	Chr7	11350973	C-T	Hetero	INTERGENIC
SBS	Chr10	3109683	A-G	Hetero	INTERGENIC
SBS	Chr10	19028647	C-T	Hetero	INTERGENIC
SBS	Chr10	19698094	G-A	Hetero	INTERGENIC
SBS	Chr11	12313883	C-G	Hetero	INTRON
SBS	Chr11	14052509	C-T	Hetero	INTRON
SBS	Chr11	14052510	A-C	Hetero	INTRON
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr12	5030258	G-A	Hetero	INTERGENIC
SBS	Chr12	8192194	G-A	Hetero	INTERGENIC
SBS	Chr12	13619846	T-A	Hetero	INTERGENIC
SBS	Chr12	13963865	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1495273	1495277	4
Deletion	Chr6	3279667	3279668	1
Deletion	Chr11	4242312	4242313	1	OsKitaake11g057000
Deletion	Chr4	5801246	5801247	1
Deletion	Chr4	8802085	8802094	9
Deletion	Chr7	9525418	9525419	1
Deletion	Chr1	11274831	11274856	25
Deletion	Chr9	12175001	12191000	15999	OsKitaake09g078900
Deletion	Chr6	12911425	12911427	2
Deletion	Chr10	17343540	17343541	1
Deletion	Chr6	19474967	19474973	6
Deletion	Chr12	22294779	22294814	35
Deletion	Chr3	22972725	22972728	3
Deletion	Chr3	23419542	23419544	2
Deletion	Chr7	24002001	24077000	74999	9
Deletion	Chr8	26075001	26156000	80999	11
Deletion	Chr7	27027779	27027811	32
Deletion	Chr7	27842722	27842737	15
Deletion	Chr1	31470693	31470709	16	OsKitaake01g315800
Deletion	Chr1	32584823	32584830	7
Deletion	Chr1	35601279	35601280	1
Deletion	Chr1	39426653	39426654	1	OsKitaake01g425000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3975365	4903054	OsKitaake05g047900
Inversion	Chr8	26154716	26580790	OsKitaake08g208200
Inversion	Chr8	26235915	26580782

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes