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Mutant Information

Mutant Name	FN2327 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2327 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12601392 C-G Hetero INTERGENIC
SBS Chr1 22430194 C-T Hetero INTERGENIC
SBS Chr1 24601754 G-T Hetero INTRON
SBS Chr1 24849728 C-T Hetero INTERGENIC
SBS Chr2 240535 C-G Hetero INTERGENIC
SBS Chr2 7151248 T-G Hetero INTERGENIC
SBS Chr2 7175990 A-T Hetero UTR_3_PRIME
SBS Chr2 7175991 C-T Hetero UTR_3_PRIME
SBS Chr2 11317404 A-G Homo INTRON
SBS Chr2 11705305 C-T Homo INTERGENIC
SBS Chr2 16026668 C-T Homo INTERGENIC
SBS Chr2 17516843 G-A Hetero INTRON
SBS Chr2 18502369 G-A Homo INTERGENIC
SBS Chr2 23617624 T-G Hetero INTRON
SBS Chr2 26736124 A-G Hetero INTERGENIC
SBS Chr2 34433504 G-A Hetero INTERGENIC
SBS Chr3 5184322 G-A Hetero INTERGENIC
SBS Chr3 9183288 C-T Hetero INTERGENIC
SBS Chr3 11329794 A-G Hetero INTRON
SBS Chr3 13891272 T-C Hetero INTERGENIC
SBS Chr3 22286999 A-T Hetero INTERGENIC
SBS Chr3 35245160 G-T Hetero INTERGENIC
SBS Chr4 314908 T-A Homo INTERGENIC
SBS Chr4 1712231 C-T Hetero INTERGENIC
SBS Chr4 1956106 G-A Hetero INTERGENIC
SBS Chr4 5653799 G-A Hetero INTERGENIC
SBS Chr4 18614605 C-A Homo INTERGENIC
SBS Chr5 13172450 G-A Hetero INTERGENIC
SBS Chr5 19850242 C-T Hetero INTRON
SBS Chr5 23736953 A-G Hetero INTERGENIC
SBS Chr5 29079759 G-T Homo INTRON
SBS Chr7 5202374 C-T Hetero INTERGENIC
SBS Chr7 6828004 C-T Hetero UTR_5_PRIME
SBS Chr7 14707367 G-A Hetero INTERGENIC
SBS Chr7 15037964 C-G Hetero UTR_3_PRIME
SBS Chr8 3177540 T-C Hetero INTERGENIC
SBS Chr8 23191945 T-C Hetero INTERGENIC
SBS Chr8 27866898 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 18433478 T-A Hetero INTRON
SBS Chr10 21310062 C-T Hetero INTERGENIC
SBS Chr11 20510290 G-A Hetero INTERGENIC
SBS Chr11 22939948 T-C Hetero INTERGENIC
SBS Chr11 27043877 C-T Homo INTERGENIC
SBS Chr12 8515688 C-T Hetero INTERGENIC
SBS Chr12 12316369 T-A Hetero INTERGENIC
SBS Chr12 14854996 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2167338 2167342 4
Deletion Chr12 8518001 8527000 8999
Deletion Chr11 8877758 8877759 1
Deletion Chr10 13374873 13374889 16
Deletion Chr8 14212618 14212619 1
Deletion Chr8 14221631 14221639 8
Deletion Chr9 14439152 14439155 3
Deletion Chr3 16528045 16528047 2
Deletion Chr9 18750821 18750832 11
Deletion Chr10 21746761 21746768 7
Deletion Chr4 22119242 22119250 8
Deletion Chr5 24975001 24986000 10999 OsKitaake05g218000
Deletion Chr2 25209020 25209022 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19412390 19412398 7
Insertion Chr4 25490521 25490526 4
Insertion Chr7 16380696 16380699 2
Insertion Chr11 6420656 6420659 2
Insertion Chr12 23070939 23070942 2
Insertion Chr3 19007812 19007815 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7674476 8179770

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 10842388 Chr1 19342544
Translocation Chr2 13817405 Chr1 17253002

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12601392	C-G	Hetero	INTERGENIC
SBS	Chr1	22430194	C-T	Hetero	INTERGENIC
SBS	Chr1	24601754	G-T	Hetero	INTRON
SBS	Chr1	24849728	C-T	Hetero	INTERGENIC
SBS	Chr2	240535	C-G	Hetero	INTERGENIC
SBS	Chr2	7151248	T-G	Hetero	INTERGENIC
SBS	Chr2	7175990	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	7175991	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	11317404	A-G	Homo	INTRON
SBS	Chr2	11705305	C-T	Homo	INTERGENIC
SBS	Chr2	16026668	C-T	Homo	INTERGENIC
SBS	Chr2	17516843	G-A	Hetero	INTRON
SBS	Chr2	18502369	G-A	Homo	INTERGENIC
SBS	Chr2	23617624	T-G	Hetero	INTRON
SBS	Chr2	26736124	A-G	Hetero	INTERGENIC
SBS	Chr2	34433504	G-A	Hetero	INTERGENIC
SBS	Chr3	5184322	G-A	Hetero	INTERGENIC
SBS	Chr3	9183288	C-T	Hetero	INTERGENIC
SBS	Chr3	11329794	A-G	Hetero	INTRON
SBS	Chr3	13891272	T-C	Hetero	INTERGENIC
SBS	Chr3	22286999	A-T	Hetero	INTERGENIC
SBS	Chr3	35245160	G-T	Hetero	INTERGENIC
SBS	Chr4	314908	T-A	Homo	INTERGENIC
SBS	Chr4	1712231	C-T	Hetero	INTERGENIC
SBS	Chr4	1956106	G-A	Hetero	INTERGENIC
SBS	Chr4	5653799	G-A	Hetero	INTERGENIC
SBS	Chr4	18614605	C-A	Homo	INTERGENIC
SBS	Chr5	13172450	G-A	Hetero	INTERGENIC
SBS	Chr5	19850242	C-T	Hetero	INTRON
SBS	Chr5	23736953	A-G	Hetero	INTERGENIC
SBS	Chr5	29079759	G-T	Homo	INTRON
SBS	Chr7	5202374	C-T	Hetero	INTERGENIC
SBS	Chr7	6828004	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	14707367	G-A	Hetero	INTERGENIC
SBS	Chr7	15037964	C-G	Hetero	UTR_3_PRIME
SBS	Chr8	3177540	T-C	Hetero	INTERGENIC
SBS	Chr8	23191945	T-C	Hetero	INTERGENIC
SBS	Chr8	27866898	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	18433478	T-A	Hetero	INTRON
SBS	Chr10	21310062	C-T	Hetero	INTERGENIC
SBS	Chr11	20510290	G-A	Hetero	INTERGENIC
SBS	Chr11	22939948	T-C	Hetero	INTERGENIC
SBS	Chr11	27043877	C-T	Homo	INTERGENIC
SBS	Chr12	8515688	C-T	Hetero	INTERGENIC
SBS	Chr12	12316369	T-A	Hetero	INTERGENIC
SBS	Chr12	14854996	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2167338	2167342	4
Deletion	Chr12	8518001	8527000	8999
Deletion	Chr11	8877758	8877759	1
Deletion	Chr10	13374873	13374889	16
Deletion	Chr8	14212618	14212619	1
Deletion	Chr8	14221631	14221639	8
Deletion	Chr9	14439152	14439155	3
Deletion	Chr3	16528045	16528047	2
Deletion	Chr9	18750821	18750832	11
Deletion	Chr10	21746761	21746768	7
Deletion	Chr4	22119242	22119250	8
Deletion	Chr5	24975001	24986000	10999	OsKitaake05g218000
Deletion	Chr2	25209020	25209022	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7674476	8179770

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes