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Mutant Information

Mutant Name	FN2328 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2328 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7247243 A-G Hetero SYNONYMOUS_CODING
SBS Chr1 11949538 A-T Hetero INTERGENIC
SBS Chr1 20193335 C-A Hetero INTERGENIC
SBS Chr1 21831422 A-C Hetero INTERGENIC
SBS Chr1 25041724 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g242500
SBS Chr1 25331892 G-A Hetero INTERGENIC
SBS Chr1 39577174 C-T Homo INTERGENIC
SBS Chr2 6421119 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 6421124 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g087050
SBS Chr2 6421125 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 8137446 C-A Hetero INTERGENIC
SBS Chr2 9285367 C-T Hetero INTERGENIC
SBS Chr2 18175788 G-A Hetero INTERGENIC
SBS Chr2 21486320 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g207700
SBS Chr2 23174640 A-G Homo INTERGENIC
SBS Chr2 24401915 A-G Homo INTRON
SBS Chr3 18969206 G-A Hetero INTERGENIC
SBS Chr3 32928592 C-A Homo INTERGENIC
SBS Chr3 35232500 G-A Hetero INTERGENIC
SBS Chr4 12636802 C-A Hetero INTERGENIC
SBS Chr4 14723168 A-T Hetero INTERGENIC
SBS Chr4 25501334 C-T Hetero INTERGENIC
SBS Chr5 5135930 T-A Hetero INTERGENIC
SBS Chr5 7081253 C-T Hetero UTR_5_PRIME
SBS Chr5 8631477 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g082400
SBS Chr5 23326017 C-A Homo INTERGENIC
SBS Chr7 8210287 C-T Hetero INTERGENIC
SBS Chr8 4336532 T-A Hetero INTERGENIC
SBS Chr8 17082326 C-T Homo INTERGENIC
SBS Chr9 7227551 C-T Hetero INTERGENIC
SBS Chr10 21437367 C-T Homo INTERGENIC
SBS Chr11 5168860 C-T Homo SYNONYMOUS_CODING
SBS Chr11 6953247 C-T Homo INTERGENIC
SBS Chr11 10746285 C-T Homo INTERGENIC
SBS Chr11 19297680 T-C Hetero INTERGENIC
SBS Chr11 19297689 G-T Hetero INTERGENIC
SBS Chr12 863035 G-A Homo INTERGENIC
SBS Chr12 14954938 T-C Hetero INTERGENIC
SBS Chr12 17591307 A-G Homo INTERGENIC
SBS Chr12 21823190 C-G Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 248263 248280 17
Deletion Chr7 470935 470946 11
Deletion Chr7 2520016 2520019 3
Deletion Chr2 2950765 2950767 2
Deletion Chr11 5155278 5155279 1
Deletion Chr9 5517001 5530000 12999 OsKitaake09g032000
Deletion Chr9 6171564 6171565 1
Deletion Chr12 7541029 7541031 2
Deletion Chr8 7986594 7986595 1
Deletion Chr9 9568070 9568072 2
Deletion Chr7 12098001 12133000 34999
Deletion Chr10 12762708 12762721 13
Deletion Chr1 12975937 12975938 1
Deletion Chr7 15171163 15171170 7
Deletion Chr6 16393357 16393373 16
Deletion Chr2 17437247 17437250 3
Deletion Chr1 17489004 17489006 2
Deletion Chr12 18429357 18429359 2
Deletion Chr2 19990731 19990732 1
Deletion Chr4 20578893 20578898 5
Deletion Chr2 22765599 22765600 1
Deletion Chr7 25546783 25546784 1
Deletion Chr2 25732257 25732269 12
Deletion Chr3 35339037 35339038 1 OsKitaake03g387600

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 198015 198018 2
Insertion Chr2 17083475 17083479 3
Insertion Chr3 2382740 2382743 2
Insertion Chr3 30423311 30423315 3
Insertion Chr7 7054273 7054276 2
Insertion Chr9 7681786 7681789 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8538787 8723726 OsKitaake03g119300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16034250 Chr3 8538798 OsKitaake10g106300
Translocation Chr7 21655670 Chr1 30652171
Translocation Chr7 21811168 Chr1 30652173 OsKitaake07g183300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7247243	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	11949538	A-T	Hetero	INTERGENIC
SBS	Chr1	20193335	C-A	Hetero	INTERGENIC
SBS	Chr1	21831422	A-C	Hetero	INTERGENIC
SBS	Chr1	25041724	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g242500
SBS	Chr1	25331892	G-A	Hetero	INTERGENIC
SBS	Chr1	39577174	C-T	Homo	INTERGENIC
SBS	Chr2	6421119	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	6421124	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g087050
SBS	Chr2	6421125	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	8137446	C-A	Hetero	INTERGENIC
SBS	Chr2	9285367	C-T	Hetero	INTERGENIC
SBS	Chr2	18175788	G-A	Hetero	INTERGENIC
SBS	Chr2	21486320	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g207700
SBS	Chr2	23174640	A-G	Homo	INTERGENIC
SBS	Chr2	24401915	A-G	Homo	INTRON
SBS	Chr3	18969206	G-A	Hetero	INTERGENIC
SBS	Chr3	32928592	C-A	Homo	INTERGENIC
SBS	Chr3	35232500	G-A	Hetero	INTERGENIC
SBS	Chr4	12636802	C-A	Hetero	INTERGENIC
SBS	Chr4	14723168	A-T	Hetero	INTERGENIC
SBS	Chr4	25501334	C-T	Hetero	INTERGENIC
SBS	Chr5	5135930	T-A	Hetero	INTERGENIC
SBS	Chr5	7081253	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	8631477	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g082400
SBS	Chr5	23326017	C-A	Homo	INTERGENIC
SBS	Chr7	8210287	C-T	Hetero	INTERGENIC
SBS	Chr8	4336532	T-A	Hetero	INTERGENIC
SBS	Chr8	17082326	C-T	Homo	INTERGENIC
SBS	Chr9	7227551	C-T	Hetero	INTERGENIC
SBS	Chr10	21437367	C-T	Homo	INTERGENIC
SBS	Chr11	5168860	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	6953247	C-T	Homo	INTERGENIC
SBS	Chr11	10746285	C-T	Homo	INTERGENIC
SBS	Chr11	19297680	T-C	Hetero	INTERGENIC
SBS	Chr11	19297689	G-T	Hetero	INTERGENIC
SBS	Chr12	863035	G-A	Homo	INTERGENIC
SBS	Chr12	14954938	T-C	Hetero	INTERGENIC
SBS	Chr12	17591307	A-G	Homo	INTERGENIC
SBS	Chr12	21823190	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	248263	248280	17
Deletion	Chr7	470935	470946	11
Deletion	Chr7	2520016	2520019	3
Deletion	Chr2	2950765	2950767	2
Deletion	Chr11	5155278	5155279	1
Deletion	Chr9	5517001	5530000	12999	OsKitaake09g032000
Deletion	Chr9	6171564	6171565	1
Deletion	Chr12	7541029	7541031	2
Deletion	Chr8	7986594	7986595	1
Deletion	Chr9	9568070	9568072	2
Deletion	Chr7	12098001	12133000	34999
Deletion	Chr10	12762708	12762721	13
Deletion	Chr1	12975937	12975938	1
Deletion	Chr7	15171163	15171170	7
Deletion	Chr6	16393357	16393373	16
Deletion	Chr2	17437247	17437250	3
Deletion	Chr1	17489004	17489006	2
Deletion	Chr12	18429357	18429359	2
Deletion	Chr2	19990731	19990732	1
Deletion	Chr4	20578893	20578898	5
Deletion	Chr2	22765599	22765600	1
Deletion	Chr7	25546783	25546784	1
Deletion	Chr2	25732257	25732269	12
Deletion	Chr3	35339037	35339038	1	OsKitaake03g387600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8538787	8723726	OsKitaake03g119300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes