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Mutant Information

Mutant Name	FN2329 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2329 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10683853 C-G Hetero INTRON
SBS Chr1 13592387 T-A Hetero INTERGENIC
SBS Chr1 14417338 A-G Hetero INTERGENIC
SBS Chr1 16746199 T-C Hetero INTERGENIC
SBS Chr1 16746202 T-A Hetero INTERGENIC
SBS Chr2 2839267 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g040700
SBS Chr2 11446272 A-G Hetero INTRON
SBS Chr2 16505796 G-A Hetero INTERGENIC
SBS Chr2 36345155 T-G Hetero INTRON
SBS Chr3 2295988 C-A Hetero INTERGENIC
SBS Chr3 9145230 C-A Hetero INTERGENIC
SBS Chr4 21447210 C-A Hetero INTERGENIC
SBS Chr4 25540152 C-A Hetero INTERGENIC
SBS Chr4 34734282 C-G Hetero INTERGENIC
SBS Chr5 8254669 T-C Hetero INTERGENIC
SBS Chr5 8987340 C-T Hetero INTERGENIC
SBS Chr5 29470578 T-C Hetero INTERGENIC
SBS Chr6 3067374 C-T Hetero INTERGENIC
SBS Chr6 11198889 A-G Homo INTERGENIC
SBS Chr6 16624510 A-T Hetero INTERGENIC
SBS Chr6 19855392 A-T Hetero INTERGENIC
SBS Chr7 6647287 G-A Hetero INTERGENIC
SBS Chr8 17847374 G-T Hetero INTRON
SBS Chr8 18429521 A-C Hetero UTR_3_PRIME
SBS Chr8 23356494 C-T Hetero UTR_3_PRIME
SBS Chr9 10411646 A-G Hetero INTRON
SBS Chr9 10483021 G-A Hetero SPLICE_SITE_REGION
SBS Chr9 13489264 A-T Hetero INTRON
SBS Chr10 334376 T-G Hetero INTERGENIC
SBS Chr10 6943503 G-A Hetero INTERGENIC
SBS Chr10 10388340 T-A Hetero INTERGENIC
SBS Chr10 12170078 A-C Hetero INTERGENIC
SBS Chr11 655522 C-T Hetero INTERGENIC
SBS Chr11 16932290 G-T Hetero INTERGENIC
SBS Chr11 16932292 G-T Hetero INTERGENIC
SBS Chr11 24148998 A-G Hetero INTERGENIC
SBS Chr11 26252124 G-A Hetero INTERGENIC
SBS Chr11 26473154 T-C Hetero INTERGENIC
SBS Chr11 29290117 T-C Hetero INTERGENIC
SBS Chr12 109986 C-A Hetero INTRON
SBS Chr12 12928131 C-T Hetero INTERGENIC
SBS Chr12 13533969 G-C Hetero INTERGENIC
SBS Chr12 13587085 T-G Hetero INTERGENIC
SBS Chr12 16182104 C-T Hetero INTERGENIC
SBS Chr12 26273842 G-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 904001 959000 54999 6
Deletion Chr3 1026001 1096000 69999 13
Deletion Chr1 1928275 1928513 238
Deletion Chr10 10581448 10581449 1
Deletion Chr9 11998219 11998221 2
Deletion Chr5 12557001 12589000 31999
Deletion Chr6 13944001 13980000 35999 3
Deletion Chr2 14426001 14959000 532999 16
Deletion Chr10 14629520 14629522 2
Deletion Chr6 15432960 15432967 7
Deletion Chr7 27199001 27349000 149999 3
Deletion Chr1 36878324 36878325 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 5698794 5698797 2
Insertion Chr6 16473326 16473331 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 10627684 10718379
Inversion Chr6 10699441 10718320
Inversion Chr7 27033282 27200111 OsKitaake07g252700
Inversion Chr7 27033291 27346658 OsKitaake07g252700

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 1014932 Chr2 22503415
Translocation Chr12 11746182 Chr6 26775372
Translocation Chr12 11746486 Chr6 26775375
Translocation Chr6 23452234 Chr1 36773107 OsKitaake01g391000
Translocation Chr6 23452968 Chr1 36773100 OsKitaake01g391000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10683853	C-G	Hetero	INTRON
SBS	Chr1	13592387	T-A	Hetero	INTERGENIC
SBS	Chr1	14417338	A-G	Hetero	INTERGENIC
SBS	Chr1	16746199	T-C	Hetero	INTERGENIC
SBS	Chr1	16746202	T-A	Hetero	INTERGENIC
SBS	Chr2	2839267	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g040700
SBS	Chr2	11446272	A-G	Hetero	INTRON
SBS	Chr2	16505796	G-A	Hetero	INTERGENIC
SBS	Chr2	36345155	T-G	Hetero	INTRON
SBS	Chr3	2295988	C-A	Hetero	INTERGENIC
SBS	Chr3	9145230	C-A	Hetero	INTERGENIC
SBS	Chr4	21447210	C-A	Hetero	INTERGENIC
SBS	Chr4	25540152	C-A	Hetero	INTERGENIC
SBS	Chr4	34734282	C-G	Hetero	INTERGENIC
SBS	Chr5	8254669	T-C	Hetero	INTERGENIC
SBS	Chr5	8987340	C-T	Hetero	INTERGENIC
SBS	Chr5	29470578	T-C	Hetero	INTERGENIC
SBS	Chr6	3067374	C-T	Hetero	INTERGENIC
SBS	Chr6	11198889	A-G	Homo	INTERGENIC
SBS	Chr6	16624510	A-T	Hetero	INTERGENIC
SBS	Chr6	19855392	A-T	Hetero	INTERGENIC
SBS	Chr7	6647287	G-A	Hetero	INTERGENIC
SBS	Chr8	17847374	G-T	Hetero	INTRON
SBS	Chr8	18429521	A-C	Hetero	UTR_3_PRIME
SBS	Chr8	23356494	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	10411646	A-G	Hetero	INTRON
SBS	Chr9	10483021	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr9	13489264	A-T	Hetero	INTRON
SBS	Chr10	334376	T-G	Hetero	INTERGENIC
SBS	Chr10	6943503	G-A	Hetero	INTERGENIC
SBS	Chr10	10388340	T-A	Hetero	INTERGENIC
SBS	Chr10	12170078	A-C	Hetero	INTERGENIC
SBS	Chr11	655522	C-T	Hetero	INTERGENIC
SBS	Chr11	16932290	G-T	Hetero	INTERGENIC
SBS	Chr11	16932292	G-T	Hetero	INTERGENIC
SBS	Chr11	24148998	A-G	Hetero	INTERGENIC
SBS	Chr11	26252124	G-A	Hetero	INTERGENIC
SBS	Chr11	26473154	T-C	Hetero	INTERGENIC
SBS	Chr11	29290117	T-C	Hetero	INTERGENIC
SBS	Chr12	109986	C-A	Hetero	INTRON
SBS	Chr12	12928131	C-T	Hetero	INTERGENIC
SBS	Chr12	13533969	G-C	Hetero	INTERGENIC
SBS	Chr12	13587085	T-G	Hetero	INTERGENIC
SBS	Chr12	16182104	C-T	Hetero	INTERGENIC
SBS	Chr12	26273842	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	904001	959000	54999	6
Deletion	Chr3	1026001	1096000	69999	13
Deletion	Chr1	1928275	1928513	238
Deletion	Chr10	10581448	10581449	1
Deletion	Chr9	11998219	11998221	2
Deletion	Chr5	12557001	12589000	31999
Deletion	Chr6	13944001	13980000	35999	3
Deletion	Chr2	14426001	14959000	532999	16
Deletion	Chr10	14629520	14629522	2
Deletion	Chr6	15432960	15432967	7
Deletion	Chr7	27199001	27349000	149999	3
Deletion	Chr1	36878324	36878325	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10627684	10718379
Inversion	Chr6	10699441	10718320
Inversion	Chr7	27033282	27200111	OsKitaake07g252700
Inversion	Chr7	27033291	27346658	OsKitaake07g252700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes