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Mutant Information

Mutant Name	FN2330 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2330 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2477195 G-A Homo INTERGENIC
SBS Chr1 2477196 C-A Homo INTERGENIC
SBS Chr1 4739307 G-A Homo SPLICE_SITE_DONOR OsKitaake01g063208
SBS Chr1 13867565 G-T Hetero INTERGENIC
SBS Chr1 14011733 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g161300
SBS Chr1 15065673 A-G Hetero INTERGENIC
SBS Chr1 19835724 C-A Hetero UTR_3_PRIME
SBS Chr1 33063857 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 40671006 A-T Hetero INTRON
SBS Chr2 6674844 C-T Homo INTERGENIC
SBS Chr2 23303040 C-T Hetero INTERGENIC
SBS Chr3 16355314 G-A Homo INTERGENIC
SBS Chr3 17725984 C-A Hetero INTERGENIC
SBS Chr3 18151445 T-A Hetero UTR_5_PRIME
SBS Chr3 32753252 G-A Homo INTRON
SBS Chr4 5369420 A-G Hetero INTERGENIC
SBS Chr4 12471176 C-G Hetero INTERGENIC
SBS Chr4 15718820 A-C Hetero INTERGENIC
SBS Chr4 22721500 G-A Hetero INTERGENIC
SBS Chr5 6036256 C-T Homo INTERGENIC
SBS Chr5 11948793 A-C Hetero INTERGENIC
SBS Chr5 12829896 T-G Hetero INTERGENIC
SBS Chr5 21114594 C-T Hetero INTERGENIC
SBS Chr5 22441335 C-T Hetero INTERGENIC
SBS Chr5 26671944 G-A Hetero INTERGENIC
SBS Chr5 26867791 A-G Hetero INTRON
SBS Chr6 14122054 C-G Homo INTERGENIC
SBS Chr6 24039984 T-A Homo INTERGENIC
SBS Chr7 1971026 A-G Hetero INTERGENIC
SBS Chr7 3757775 T-G Homo UTR_3_PRIME
SBS Chr7 17987051 A-G Homo INTRON
SBS Chr7 22146380 G-T Hetero INTERGENIC
SBS Chr8 12384873 T-A Hetero INTERGENIC
SBS Chr8 15393296 A-T Hetero INTERGENIC
SBS Chr8 23383676 C-A Homo INTERGENIC
SBS Chr9 2032663 C-T Homo INTERGENIC
SBS Chr9 10101527 C-T Homo INTERGENIC
SBS Chr9 19916811 C-A Homo START_GAINED
SBS Chr9 22137371 G-A Hetero INTERGENIC
SBS Chr10 2197826 T-A Homo INTRON
SBS Chr10 2197828 A-T Homo INTRON
SBS Chr10 2197829 C-T Homo INTRON
SBS Chr10 15548555 C-T Hetero INTERGENIC
SBS Chr10 17853785 A-G Hetero INTRON
SBS Chr10 19986077 A-G Hetero INTERGENIC
SBS Chr11 10566099 G-A Hetero INTRON

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 60803 60804 1
Deletion Chr6 609187 609189 2
Deletion Chr2 4376177 4376181 4
Deletion Chr5 7172024 7172027 3
Deletion Chr9 7983092 7983104 12
Deletion Chr6 8273219 8273234 15
Deletion Chr9 10098438 10098441 3
Deletion Chr10 11374628 11374634 6
Deletion Chr2 17206982 17206994 12
Deletion Chr3 18704734 18704743 9
Deletion Chr6 29376041 29376044 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 298310 298317 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 7550137 8018516
Inversion Chr9 7550157 8018517

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7550157 Chr1 15749417
Translocation Chr9 8018520 Chr1 15749325
Translocation Chr11 11921978 Chr4 9568739 OsKitaake11g110800
Translocation Chr11 19202690 Chr1 41026323 OsKitaake01g447700
Translocation Chr11 19203018 Chr1 41026324 OsKitaake01g447700
Translocation Chr11 19418305 Chr7 25207738

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2477195	G-A	Homo	INTERGENIC
SBS	Chr1	2477196	C-A	Homo	INTERGENIC
SBS	Chr1	4739307	G-A	Homo	SPLICE_SITE_DONOR	OsKitaake01g063208
SBS	Chr1	13867565	G-T	Hetero	INTERGENIC
SBS	Chr1	14011733	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g161300
SBS	Chr1	15065673	A-G	Hetero	INTERGENIC
SBS	Chr1	19835724	C-A	Hetero	UTR_3_PRIME
SBS	Chr1	33063857	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	40671006	A-T	Hetero	INTRON
SBS	Chr2	6674844	C-T	Homo	INTERGENIC
SBS	Chr2	23303040	C-T	Hetero	INTERGENIC
SBS	Chr3	16355314	G-A	Homo	INTERGENIC
SBS	Chr3	17725984	C-A	Hetero	INTERGENIC
SBS	Chr3	18151445	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	32753252	G-A	Homo	INTRON
SBS	Chr4	5369420	A-G	Hetero	INTERGENIC
SBS	Chr4	12471176	C-G	Hetero	INTERGENIC
SBS	Chr4	15718820	A-C	Hetero	INTERGENIC
SBS	Chr4	22721500	G-A	Hetero	INTERGENIC
SBS	Chr5	6036256	C-T	Homo	INTERGENIC
SBS	Chr5	11948793	A-C	Hetero	INTERGENIC
SBS	Chr5	12829896	T-G	Hetero	INTERGENIC
SBS	Chr5	21114594	C-T	Hetero	INTERGENIC
SBS	Chr5	22441335	C-T	Hetero	INTERGENIC
SBS	Chr5	26671944	G-A	Hetero	INTERGENIC
SBS	Chr5	26867791	A-G	Hetero	INTRON
SBS	Chr6	14122054	C-G	Homo	INTERGENIC
SBS	Chr6	24039984	T-A	Homo	INTERGENIC
SBS	Chr7	1971026	A-G	Hetero	INTERGENIC
SBS	Chr7	3757775	T-G	Homo	UTR_3_PRIME
SBS	Chr7	17987051	A-G	Homo	INTRON
SBS	Chr7	22146380	G-T	Hetero	INTERGENIC
SBS	Chr8	12384873	T-A	Hetero	INTERGENIC
SBS	Chr8	15393296	A-T	Hetero	INTERGENIC
SBS	Chr8	23383676	C-A	Homo	INTERGENIC
SBS	Chr9	2032663	C-T	Homo	INTERGENIC
SBS	Chr9	10101527	C-T	Homo	INTERGENIC
SBS	Chr9	19916811	C-A	Homo	START_GAINED
SBS	Chr9	22137371	G-A	Hetero	INTERGENIC
SBS	Chr10	2197826	T-A	Homo	INTRON
SBS	Chr10	2197828	A-T	Homo	INTRON
SBS	Chr10	2197829	C-T	Homo	INTRON
SBS	Chr10	15548555	C-T	Hetero	INTERGENIC
SBS	Chr10	17853785	A-G	Hetero	INTRON
SBS	Chr10	19986077	A-G	Hetero	INTERGENIC
SBS	Chr11	10566099	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	60803	60804	1
Deletion	Chr6	609187	609189	2
Deletion	Chr2	4376177	4376181	4
Deletion	Chr5	7172024	7172027	3
Deletion	Chr9	7983092	7983104	12
Deletion	Chr6	8273219	8273234	15
Deletion	Chr9	10098438	10098441	3
Deletion	Chr10	11374628	11374634	6
Deletion	Chr2	17206982	17206994	12
Deletion	Chr3	18704734	18704743	9
Deletion	Chr6	29376041	29376044	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7550137	8018516
Inversion	Chr9	7550157	8018517

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes