Search Kitaake

Mutant Information

Mutant Name	FN2331 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2331 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16799620 G-A Hetero UTR_3_PRIME
SBS Chr1 30017167 G-A Hetero INTERGENIC
SBS Chr1 32956452 C-T Hetero INTRON
SBS Chr1 34082523 C-T Hetero INTRON
SBS Chr1 43637814 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g484700
SBS Chr2 3799609 A-G Hetero INTERGENIC
SBS Chr2 7314741 G-A Hetero INTERGENIC
SBS Chr2 33107644 G-A Homo INTERGENIC
SBS Chr3 1785348 C-G Hetero INTERGENIC
SBS Chr3 26155839 C-T Homo INTERGENIC
SBS Chr3 31708792 G-T Hetero INTERGENIC
SBS Chr3 32372741 G-A Hetero INTERGENIC
SBS Chr4 38112 G-A Hetero INTERGENIC
SBS Chr4 7023226 C-T Homo INTERGENIC
SBS Chr4 9867826 C-G Homo INTERGENIC
SBS Chr4 22119588 G-A Hetero INTERGENIC
SBS Chr4 36814597 G-A Homo INTERGENIC
SBS Chr5 2009412 G-C Homo INTERGENIC
SBS Chr5 12003693 G-A Homo INTERGENIC
SBS Chr5 17786758 T-A Hetero INTERGENIC
SBS Chr6 2838039 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g038700
SBS Chr6 5500849 T-A Hetero INTRON
SBS Chr6 13459833 C-A Hetero INTERGENIC
SBS Chr6 14761771 G-A Hetero INTERGENIC
SBS Chr6 23040881 T-C Hetero INTERGENIC
SBS Chr7 3571086 C-T Homo SYNONYMOUS_CODING
SBS Chr8 14423087 T-G Homo INTERGENIC
SBS Chr8 23545980 C-T Hetero INTERGENIC
SBS Chr9 8095114 T-G Hetero INTERGENIC
SBS Chr9 17808447 C-T Hetero INTERGENIC
SBS Chr10 5453103 C-A Homo INTERGENIC
SBS Chr10 10001712 G-T Hetero INTERGENIC
SBS Chr10 10001713 A-G Hetero INTERGENIC
SBS Chr11 9033743 G-A Hetero INTERGENIC
SBS Chr11 11001170 A-G Homo INTERGENIC
SBS Chr11 28043541 C-T Hetero INTERGENIC
SBS Chr12 4401796 G-A Hetero INTERGENIC
SBS Chr12 5477208 C-T Hetero INTRON
SBS Chr12 6167694 C-T Hetero INTERGENIC
SBS Chr12 9514079 A-T Hetero INTERGENIC
SBS Chr12 12572958 A-C Homo INTERGENIC
SBS Chr12 13951401 G-A Hetero INTERGENIC
SBS Chr12 16421894 G-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4951557 4951559 2
Deletion Chr1 6441179 6441180 1
Deletion Chr12 6900925 6900935 10
Deletion Chr1 11851515 11851519 4
Deletion Chr9 12281001 12574000 292999 24
Deletion Chr8 14085514 14085516 2
Deletion Chr6 18608199 18608200 1
Deletion Chr7 22122926 22122954 28
Deletion Chr6 26412485 26412489 4 OsKitaake06g237103
Deletion Chr5 26928555 26928559 4
Deletion Chr2 30821413 30821421 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4607924 4607927 2
Insertion Chr11 19487709 19487712 2
Insertion Chr12 23309546 23309549 2
Insertion Chr2 28849671 28849673 1
Insertion Chr11 12445264 12445318 53

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16209022 16348577
Inversion Chr8 16209025 16348577
Inversion Chr3 30621502 31177919 OsKitaake03g321700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16799620	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	30017167	G-A	Hetero	INTERGENIC
SBS	Chr1	32956452	C-T	Hetero	INTRON
SBS	Chr1	34082523	C-T	Hetero	INTRON
SBS	Chr1	43637814	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g484700
SBS	Chr2	3799609	A-G	Hetero	INTERGENIC
SBS	Chr2	7314741	G-A	Hetero	INTERGENIC
SBS	Chr2	33107644	G-A	Homo	INTERGENIC
SBS	Chr3	1785348	C-G	Hetero	INTERGENIC
SBS	Chr3	26155839	C-T	Homo	INTERGENIC
SBS	Chr3	31708792	G-T	Hetero	INTERGENIC
SBS	Chr3	32372741	G-A	Hetero	INTERGENIC
SBS	Chr4	38112	G-A	Hetero	INTERGENIC
SBS	Chr4	7023226	C-T	Homo	INTERGENIC
SBS	Chr4	9867826	C-G	Homo	INTERGENIC
SBS	Chr4	22119588	G-A	Hetero	INTERGENIC
SBS	Chr4	36814597	G-A	Homo	INTERGENIC
SBS	Chr5	2009412	G-C	Homo	INTERGENIC
SBS	Chr5	12003693	G-A	Homo	INTERGENIC
SBS	Chr5	17786758	T-A	Hetero	INTERGENIC
SBS	Chr6	2838039	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g038700
SBS	Chr6	5500849	T-A	Hetero	INTRON
SBS	Chr6	13459833	C-A	Hetero	INTERGENIC
SBS	Chr6	14761771	G-A	Hetero	INTERGENIC
SBS	Chr6	23040881	T-C	Hetero	INTERGENIC
SBS	Chr7	3571086	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	14423087	T-G	Homo	INTERGENIC
SBS	Chr8	23545980	C-T	Hetero	INTERGENIC
SBS	Chr9	8095114	T-G	Hetero	INTERGENIC
SBS	Chr9	17808447	C-T	Hetero	INTERGENIC
SBS	Chr10	5453103	C-A	Homo	INTERGENIC
SBS	Chr10	10001712	G-T	Hetero	INTERGENIC
SBS	Chr10	10001713	A-G	Hetero	INTERGENIC
SBS	Chr11	9033743	G-A	Hetero	INTERGENIC
SBS	Chr11	11001170	A-G	Homo	INTERGENIC
SBS	Chr11	28043541	C-T	Hetero	INTERGENIC
SBS	Chr12	4401796	G-A	Hetero	INTERGENIC
SBS	Chr12	5477208	C-T	Hetero	INTRON
SBS	Chr12	6167694	C-T	Hetero	INTERGENIC
SBS	Chr12	9514079	A-T	Hetero	INTERGENIC
SBS	Chr12	12572958	A-C	Homo	INTERGENIC
SBS	Chr12	13951401	G-A	Hetero	INTERGENIC
SBS	Chr12	16421894	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4951557	4951559	2
Deletion	Chr1	6441179	6441180	1
Deletion	Chr12	6900925	6900935	10
Deletion	Chr1	11851515	11851519	4
Deletion	Chr9	12281001	12574000	292999	24
Deletion	Chr8	14085514	14085516	2
Deletion	Chr6	18608199	18608200	1
Deletion	Chr7	22122926	22122954	28
Deletion	Chr6	26412485	26412489	4	OsKitaake06g237103
Deletion	Chr5	26928555	26928559	4
Deletion	Chr2	30821413	30821421	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16209022	16348577
Inversion	Chr8	16209025	16348577
Inversion	Chr3	30621502	31177919	OsKitaake03g321700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes