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Mutant Information

Mutant Name	FN2332 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2332 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13923580 C-T Hetero INTERGENIC
SBS Chr1 16874849 C-T Hetero INTERGENIC
SBS Chr2 10488373 A-G Hetero INTERGENIC
SBS Chr2 18184299 C-T Homo INTERGENIC
SBS Chr2 35143078 C-T Hetero INTERGENIC
SBS Chr3 17303298 A-C Hetero INTERGENIC
SBS Chr3 17627339 C-G Hetero INTERGENIC
SBS Chr3 24467620 T-A Hetero INTERGENIC
SBS Chr3 35010945 A-T Homo INTERGENIC
SBS Chr4 2384719 G-T Hetero INTERGENIC
SBS Chr4 4779883 C-T Hetero INTERGENIC
SBS Chr4 7486975 G-A Hetero INTERGENIC
SBS Chr4 12398004 C-T Hetero INTERGENIC
SBS Chr4 17664347 G-A Hetero INTERGENIC
SBS Chr5 5672377 C-T Hetero INTERGENIC
SBS Chr5 11798869 A-G Homo INTERGENIC
SBS Chr5 19785567 C-T Hetero INTRON
SBS Chr6 30230645 C-T Hetero INTERGENIC
SBS Chr7 14586665 G-A Hetero INTERGENIC
SBS Chr8 13746443 C-T Hetero INTERGENIC
SBS Chr8 18342223 C-A Hetero INTERGENIC
SBS Chr9 9386797 G-T Hetero INTERGENIC
SBS Chr9 9386798 A-C Hetero INTERGENIC
SBS Chr10 17681179 C-T Hetero INTERGENIC
SBS Chr11 759833 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g009400
SBS Chr11 13615705 C-A Hetero INTRON
SBS Chr11 17413372 T-G Hetero INTERGENIC
SBS Chr11 26260564 G-A Hetero INTERGENIC
SBS Chr11 26686519 G-T Hetero INTERGENIC
SBS Chr11 26767456 A-G Hetero INTERGENIC
SBS Chr11 28797641 T-C Hetero INTRON
SBS Chr12 8477890 G-A Hetero INTERGENIC
SBS Chr12 8850529 A-G Hetero INTERGENIC
SBS Chr12 19641971 C-T Hetero INTERGENIC
SBS Chr12 20941506 C-T Hetero INTRON

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 141240 141241 1
Deletion Chr11 987385 987391 6
Deletion Chr7 2059946 2059957 11
Deletion Chr6 4132646 4132647 1
Deletion Chr1 5116930 5116932 2
Deletion Chr12 5152366 5152385 19
Deletion Chr9 5801643 5801644 1
Deletion Chr3 6639324 6639326 2
Deletion Chr6 6805674 6805676 2
Deletion Chr10 8157950 8157951 1
Deletion Chr8 11996094 11996107 13
Deletion Chr8 14117047 14117048 1
Deletion Chr8 14637867 14637869 2
Deletion Chr9 14894400 14894403 3
Deletion Chr10 16244311 16244318 7
Deletion Chr3 16427649 16427661 12
Deletion Chr1 16658457 16658473 16
Deletion Chr8 17088001 17115000 26999 3
Deletion Chr3 17149870 17149872 2
Deletion Chr2 17386437 17386453 16
Deletion Chr2 18112003 18112004 1
Deletion Chr8 18312001 18343000 30999 3
Deletion Chr1 19557404 19557413 9
Deletion Chr8 21222051 21222060 9
Deletion Chr7 21328721 21328744 23
Deletion Chr7 27165874 27165885 11
Deletion Chr3 33395507 33395516 9
Deletion Chr2 34405649 34405664 15
Deletion Chr2 35459311 35459314 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4037151 4037154 2
Insertion Chr5 26046421 26046424 2
Insertion Chr6 4684815 4684828 12
Insertion Chr7 550138 550142 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13923580	C-T	Hetero	INTERGENIC
SBS	Chr1	16874849	C-T	Hetero	INTERGENIC
SBS	Chr2	10488373	A-G	Hetero	INTERGENIC
SBS	Chr2	18184299	C-T	Homo	INTERGENIC
SBS	Chr2	35143078	C-T	Hetero	INTERGENIC
SBS	Chr3	17303298	A-C	Hetero	INTERGENIC
SBS	Chr3	17627339	C-G	Hetero	INTERGENIC
SBS	Chr3	24467620	T-A	Hetero	INTERGENIC
SBS	Chr3	35010945	A-T	Homo	INTERGENIC
SBS	Chr4	2384719	G-T	Hetero	INTERGENIC
SBS	Chr4	4779883	C-T	Hetero	INTERGENIC
SBS	Chr4	7486975	G-A	Hetero	INTERGENIC
SBS	Chr4	12398004	C-T	Hetero	INTERGENIC
SBS	Chr4	17664347	G-A	Hetero	INTERGENIC
SBS	Chr5	5672377	C-T	Hetero	INTERGENIC
SBS	Chr5	11798869	A-G	Homo	INTERGENIC
SBS	Chr5	19785567	C-T	Hetero	INTRON
SBS	Chr6	30230645	C-T	Hetero	INTERGENIC
SBS	Chr7	14586665	G-A	Hetero	INTERGENIC
SBS	Chr8	13746443	C-T	Hetero	INTERGENIC
SBS	Chr8	18342223	C-A	Hetero	INTERGENIC
SBS	Chr9	9386797	G-T	Hetero	INTERGENIC
SBS	Chr9	9386798	A-C	Hetero	INTERGENIC
SBS	Chr10	17681179	C-T	Hetero	INTERGENIC
SBS	Chr11	759833	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g009400
SBS	Chr11	13615705	C-A	Hetero	INTRON
SBS	Chr11	17413372	T-G	Hetero	INTERGENIC
SBS	Chr11	26260564	G-A	Hetero	INTERGENIC
SBS	Chr11	26686519	G-T	Hetero	INTERGENIC
SBS	Chr11	26767456	A-G	Hetero	INTERGENIC
SBS	Chr11	28797641	T-C	Hetero	INTRON
SBS	Chr12	8477890	G-A	Hetero	INTERGENIC
SBS	Chr12	8850529	A-G	Hetero	INTERGENIC
SBS	Chr12	19641971	C-T	Hetero	INTERGENIC
SBS	Chr12	20941506	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	141240	141241	1
Deletion	Chr11	987385	987391	6
Deletion	Chr7	2059946	2059957	11
Deletion	Chr6	4132646	4132647	1
Deletion	Chr1	5116930	5116932	2
Deletion	Chr12	5152366	5152385	19
Deletion	Chr9	5801643	5801644	1
Deletion	Chr3	6639324	6639326	2
Deletion	Chr6	6805674	6805676	2
Deletion	Chr10	8157950	8157951	1
Deletion	Chr8	11996094	11996107	13
Deletion	Chr8	14117047	14117048	1
Deletion	Chr8	14637867	14637869	2
Deletion	Chr9	14894400	14894403	3
Deletion	Chr10	16244311	16244318	7
Deletion	Chr3	16427649	16427661	12
Deletion	Chr1	16658457	16658473	16
Deletion	Chr8	17088001	17115000	26999	3
Deletion	Chr3	17149870	17149872	2
Deletion	Chr2	17386437	17386453	16
Deletion	Chr2	18112003	18112004	1
Deletion	Chr8	18312001	18343000	30999	3
Deletion	Chr1	19557404	19557413	9
Deletion	Chr8	21222051	21222060	9
Deletion	Chr7	21328721	21328744	23
Deletion	Chr7	27165874	27165885	11
Deletion	Chr3	33395507	33395516	9
Deletion	Chr2	34405649	34405664	15
Deletion	Chr2	35459311	35459314	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes