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Mutant Information

Mutant Name	FN2333 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2333 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2288124 T-C Hetero INTRON
SBS Chr1 6989842 G-A Hetero INTERGENIC
SBS Chr1 12897388 G-A Hetero INTERGENIC
SBS Chr1 18627974 T-A Hetero INTRON
SBS Chr1 20844443 T-A Hetero INTERGENIC
SBS Chr1 21972528 A-G Hetero INTRON
SBS Chr1 28500414 C-T Homo INTERGENIC
SBS Chr1 38143343 G-A Hetero INTERGENIC
SBS Chr2 2221388 G-A Hetero INTERGENIC
SBS Chr2 36361465 G-A Hetero INTERGENIC
SBS Chr2 36365075 G-T Hetero INTRON
SBS Chr3 1193495 C-T Hetero INTERGENIC
SBS Chr3 3079537 T-C Hetero INTERGENIC
SBS Chr3 21768292 C-T Hetero INTERGENIC
SBS Chr3 32862022 C-T Hetero INTERGENIC
SBS Chr4 3741023 C-T Hetero INTERGENIC
SBS Chr4 4749118 G-T Hetero INTERGENIC
SBS Chr4 4749119 C-T Hetero INTERGENIC
SBS Chr4 13532719 A-C Hetero INTERGENIC
SBS Chr4 14160003 C-A Hetero INTERGENIC
SBS Chr4 14160004 T-A Hetero INTERGENIC
SBS Chr4 14238584 C-A Hetero INTERGENIC
SBS Chr4 23427141 G-A Hetero INTERGENIC
SBS Chr5 2517552 C-A Homo INTERGENIC
SBS Chr5 4930200 G-C Hetero INTERGENIC
SBS Chr5 21914825 A-C Hetero INTERGENIC
SBS Chr6 3793657 C-T Hetero INTERGENIC
SBS Chr6 8564663 A-T Hetero INTERGENIC
SBS Chr6 11769632 C-T Hetero INTRON
SBS Chr6 12503232 G-A Hetero INTERGENIC
SBS Chr6 23582676 T-C Hetero INTERGENIC
SBS Chr6 26448683 T-A Hetero INTERGENIC
SBS Chr6 28822335 G-A Hetero INTERGENIC
SBS Chr7 6829991 A-T Hetero UTR_3_PRIME
SBS Chr7 13274496 G-A Hetero INTERGENIC
SBS Chr7 21042334 C-A Hetero INTRON
SBS Chr8 1617992 G-T Hetero INTERGENIC
SBS Chr8 1936517 G-A Hetero INTERGENIC
SBS Chr8 4008791 T-C Hetero INTERGENIC
SBS Chr8 12288181 C-T Hetero INTERGENIC
SBS Chr8 14806982 A-T Hetero INTERGENIC
SBS Chr8 14806987 T-A Hetero INTERGENIC
SBS Chr8 19321257 A-T Hetero INTERGENIC
SBS Chr8 21798059 T-G Hetero INTERGENIC
SBS Chr8 24382677 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g188600
SBS Chr9 342526 C-A Hetero INTERGENIC
SBS Chr9 7218357 C-T Hetero INTERGENIC
SBS Chr9 15741159 C-A Hetero INTRON
SBS Chr9 20998653 G-A Hetero INTRON
SBS Chr10 2610308 C-T Homo INTRON
SBS Chr10 23928269 G-A Hetero UTR_5_PRIME
SBS Chr11 2647448 T-A Hetero INTERGENIC
SBS Chr11 13100839 A-C Hetero INTERGENIC
SBS Chr11 15693943 G-A Hetero INTERGENIC
SBS Chr11 15693944 T-A Hetero INTERGENIC
SBS Chr11 16892956 G-T Hetero INTERGENIC
SBS Chr11 22125433 A-T Hetero INTERGENIC
SBS Chr12 2729591 A-C Hetero INTERGENIC
SBS Chr12 10568804 C-T Hetero INTERGENIC
SBS Chr12 13079760 G-C Hetero INTERGENIC
SBS Chr12 16615926 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g125000
SBS Chr12 23526874 T-C Hetero INTERGENIC
SBS Chr12 24534703 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g198300

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1699327 1699329 2
Deletion Chr3 6571778 6571779 1 OsKitaake03g093700
Deletion Chr10 10299603 10299604 1
Deletion Chr2 22008425 22008435 10
Deletion Chr10 23293176 23293177 1
Deletion Chr3 23427951 23427953 2
Deletion Chr10 23858130 23858133 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 34556360 35181235

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2288124	T-C	Hetero	INTRON
SBS	Chr1	6989842	G-A	Hetero	INTERGENIC
SBS	Chr1	12897388	G-A	Hetero	INTERGENIC
SBS	Chr1	18627974	T-A	Hetero	INTRON
SBS	Chr1	20844443	T-A	Hetero	INTERGENIC
SBS	Chr1	21972528	A-G	Hetero	INTRON
SBS	Chr1	28500414	C-T	Homo	INTERGENIC
SBS	Chr1	38143343	G-A	Hetero	INTERGENIC
SBS	Chr2	2221388	G-A	Hetero	INTERGENIC
SBS	Chr2	36361465	G-A	Hetero	INTERGENIC
SBS	Chr2	36365075	G-T	Hetero	INTRON
SBS	Chr3	1193495	C-T	Hetero	INTERGENIC
SBS	Chr3	3079537	T-C	Hetero	INTERGENIC
SBS	Chr3	21768292	C-T	Hetero	INTERGENIC
SBS	Chr3	32862022	C-T	Hetero	INTERGENIC
SBS	Chr4	3741023	C-T	Hetero	INTERGENIC
SBS	Chr4	4749118	G-T	Hetero	INTERGENIC
SBS	Chr4	4749119	C-T	Hetero	INTERGENIC
SBS	Chr4	13532719	A-C	Hetero	INTERGENIC
SBS	Chr4	14160003	C-A	Hetero	INTERGENIC
SBS	Chr4	14160004	T-A	Hetero	INTERGENIC
SBS	Chr4	14238584	C-A	Hetero	INTERGENIC
SBS	Chr4	23427141	G-A	Hetero	INTERGENIC
SBS	Chr5	2517552	C-A	Homo	INTERGENIC
SBS	Chr5	4930200	G-C	Hetero	INTERGENIC
SBS	Chr5	21914825	A-C	Hetero	INTERGENIC
SBS	Chr6	3793657	C-T	Hetero	INTERGENIC
SBS	Chr6	8564663	A-T	Hetero	INTERGENIC
SBS	Chr6	11769632	C-T	Hetero	INTRON
SBS	Chr6	12503232	G-A	Hetero	INTERGENIC
SBS	Chr6	23582676	T-C	Hetero	INTERGENIC
SBS	Chr6	26448683	T-A	Hetero	INTERGENIC
SBS	Chr6	28822335	G-A	Hetero	INTERGENIC
SBS	Chr7	6829991	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	13274496	G-A	Hetero	INTERGENIC
SBS	Chr7	21042334	C-A	Hetero	INTRON
SBS	Chr8	1617992	G-T	Hetero	INTERGENIC
SBS	Chr8	1936517	G-A	Hetero	INTERGENIC
SBS	Chr8	4008791	T-C	Hetero	INTERGENIC
SBS	Chr8	12288181	C-T	Hetero	INTERGENIC
SBS	Chr8	14806982	A-T	Hetero	INTERGENIC
SBS	Chr8	14806987	T-A	Hetero	INTERGENIC
SBS	Chr8	19321257	A-T	Hetero	INTERGENIC
SBS	Chr8	21798059	T-G	Hetero	INTERGENIC
SBS	Chr8	24382677	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g188600
SBS	Chr9	342526	C-A	Hetero	INTERGENIC
SBS	Chr9	7218357	C-T	Hetero	INTERGENIC
SBS	Chr9	15741159	C-A	Hetero	INTRON
SBS	Chr9	20998653	G-A	Hetero	INTRON
SBS	Chr10	2610308	C-T	Homo	INTRON
SBS	Chr10	23928269	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	2647448	T-A	Hetero	INTERGENIC
SBS	Chr11	13100839	A-C	Hetero	INTERGENIC
SBS	Chr11	15693943	G-A	Hetero	INTERGENIC
SBS	Chr11	15693944	T-A	Hetero	INTERGENIC
SBS	Chr11	16892956	G-T	Hetero	INTERGENIC
SBS	Chr11	22125433	A-T	Hetero	INTERGENIC
SBS	Chr12	2729591	A-C	Hetero	INTERGENIC
SBS	Chr12	10568804	C-T	Hetero	INTERGENIC
SBS	Chr12	13079760	G-C	Hetero	INTERGENIC
SBS	Chr12	16615926	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g125000
SBS	Chr12	23526874	T-C	Hetero	INTERGENIC
SBS	Chr12	24534703	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g198300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1699327	1699329	2
Deletion	Chr3	6571778	6571779	1	OsKitaake03g093700
Deletion	Chr10	10299603	10299604	1
Deletion	Chr2	22008425	22008435	10
Deletion	Chr10	23293176	23293177	1
Deletion	Chr3	23427951	23427953	2
Deletion	Chr10	23858130	23858133	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	34556360	35181235

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes