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| Mutant Information |
|---|
| Mutant Name | FN2334 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2334 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11843762 | C-G | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 14601089 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36719088 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 226322 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1293785 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1486466 | G-C | Hetero | INTRON | |
| SBS | Chr2 | 1580534 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33155664 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr2 | 35013210 | T-A | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 6678034 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14226773 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 26202116 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 37420257 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1799363 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31541523 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 33230530 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 27533017 | C-T | Homo | INTRON | |
| SBS | Chr6 | 1404777 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 2726665 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 3141801 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 17242109 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19692018 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2218502 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g031000 |
| SBS | Chr7 | 12094042 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2657323 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 15777135 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 16005548 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16365259 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16442255 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16633952 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2782273 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 3689723 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10868967 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 7400992 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 1907759 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 5879993 | T-C | Hetero | INTRON | |
| SBS | Chr11 | 9928420 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10390476 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 24266732 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 4104211 | C-T | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2749258 | 2749411 | 153 | |
| Deletion | Chr10 | 10196765 | 10196766 | 1 | OsKitaake10g059200 |
| Deletion | Chr3 | 24290015 | 24290019 | 4 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 17069847 | 17069850 | 2 | |
| Insertion | Chr4 | 25941906 | 25941909 | 2 | |
| Insertion | Chr5 | 5588785 | 5588788 | 2 | |
| Insertion | Chr12 | 24610157 | 24610160 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 19076980 | 19248725 | |
| Inversion | Chr1 | 19076985 | 19248730 | |
| Inversion | Chr2 | 32410755 | 32762699 | OsKitaake02g331500 |
| Inversion | Chr2 | 32410772 | 32762798 | OsKitaake02g331500 |