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Mutant Information

Mutant Name	FN2335 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2335 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2783366 C-T Hetero INTRON
SBS Chr1 4871097 G-A Hetero INTERGENIC
SBS Chr1 9307083 C-T Hetero START_GAINED
SBS Chr1 17162051 C-A Hetero INTERGENIC
SBS Chr1 17162053 C-A Hetero INTERGENIC
SBS Chr1 22400898 C-T Hetero INTERGENIC
SBS Chr1 25628142 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g248800
SBS Chr1 43934212 A-T Homo INTERGENIC
SBS Chr2 8188991 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g104700
SBS Chr2 14506260 G-A Hetero INTERGENIC
SBS Chr2 22139270 T-A Hetero INTERGENIC
SBS Chr2 22539325 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 22925652 A-T Hetero INTERGENIC
SBS Chr3 20636632 G-A Homo INTERGENIC
SBS Chr4 4436703 C-T Hetero INTERGENIC
SBS Chr4 6933604 A-C Homo INTERGENIC
SBS Chr4 10433622 A-C Hetero INTERGENIC
SBS Chr4 17177459 C-T Hetero INTERGENIC
SBS Chr4 17820274 C-T Hetero INTERGENIC
SBS Chr4 20918061 A-T Hetero INTERGENIC
SBS Chr4 33742850 G-A Hetero INTRON
SBS Chr5 8294006 G-T Hetero INTERGENIC
SBS Chr5 8294007 G-T Hetero INTERGENIC
SBS Chr5 20342027 T-C Hetero INTERGENIC
SBS Chr6 6974477 T-G Homo INTERGENIC
SBS Chr7 8817824 C-T Hetero INTERGENIC
SBS Chr7 11015051 T-G Hetero INTERGENIC
SBS Chr7 24493158 G-A Hetero INTERGENIC
SBS Chr7 24827529 C-A Hetero INTERGENIC
SBS Chr8 3443675 G-A Hetero INTERGENIC
SBS Chr8 18168946 G-C Homo INTERGENIC
SBS Chr9 3302144 G-A Hetero INTERGENIC
SBS Chr9 20213969 C-T Hetero INTERGENIC
SBS Chr10 18418234 G-A Hetero INTERGENIC
SBS Chr10 20074783 A-G Hetero INTERGENIC
SBS Chr11 3398739 T-C Hetero UTR_3_PRIME
SBS Chr11 11101266 A-T Hetero INTERGENIC
SBS Chr11 11176867 A-G Hetero INTERGENIC
SBS Chr11 12305580 C-G Hetero INTERGENIC
SBS Chr11 25791940 C-T Homo INTERGENIC
SBS Chr12 11313794 T-C Hetero INTERGENIC
SBS Chr12 18921395 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 4391340 4391344 4
Deletion Chr3 5768147 5768172 25 OsKitaake03g081700
Deletion Chr4 9893435 9893437 2
Deletion Chr4 10067669 10067684 15
Deletion Chr7 13883391 13883393 2
Deletion Chr4 14458180 14458190 10
Deletion Chr7 14473606 14473608 2
Deletion Chr8 14643705 14643709 4
Deletion Chr4 17476001 17495000 18999 4
Deletion Chr12 19016420 19016421 1
Deletion Chr11 19991062 19991064 2
Deletion Chr7 20361308 20361311 3
Deletion Chr3 24842323 24842333 10
Deletion Chr1 25323645 25323651 6
Deletion Chr4 26445857 26445869 12 OsKitaake04g189700
Deletion Chr2 27539645 27539647 2
Deletion Chr2 30395956 30395959 3

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14663138 14663142 3
Insertion Chr1 28155523 28155526 2
Insertion Chr2 32365298 32365301 2
Insertion Chr3 9342174 9342182 7
Insertion Chr6 26744194 26744197 2
Insertion Chr7 2034753 2034756 2
Insertion Chr7 18539237 18539241 3 OsKitaake07g150800
Insertion Chr7 19375234 19375237 2
Insertion Chr9 21086414 21086417 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2783366	C-T	Hetero	INTRON
SBS	Chr1	4871097	G-A	Hetero	INTERGENIC
SBS	Chr1	9307083	C-T	Hetero	START_GAINED
SBS	Chr1	17162051	C-A	Hetero	INTERGENIC
SBS	Chr1	17162053	C-A	Hetero	INTERGENIC
SBS	Chr1	22400898	C-T	Hetero	INTERGENIC
SBS	Chr1	25628142	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g248800
SBS	Chr1	43934212	A-T	Homo	INTERGENIC
SBS	Chr2	8188991	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g104700
SBS	Chr2	14506260	G-A	Hetero	INTERGENIC
SBS	Chr2	22139270	T-A	Hetero	INTERGENIC
SBS	Chr2	22539325	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22925652	A-T	Hetero	INTERGENIC
SBS	Chr3	20636632	G-A	Homo	INTERGENIC
SBS	Chr4	4436703	C-T	Hetero	INTERGENIC
SBS	Chr4	6933604	A-C	Homo	INTERGENIC
SBS	Chr4	10433622	A-C	Hetero	INTERGENIC
SBS	Chr4	17177459	C-T	Hetero	INTERGENIC
SBS	Chr4	17820274	C-T	Hetero	INTERGENIC
SBS	Chr4	20918061	A-T	Hetero	INTERGENIC
SBS	Chr4	33742850	G-A	Hetero	INTRON
SBS	Chr5	8294006	G-T	Hetero	INTERGENIC
SBS	Chr5	8294007	G-T	Hetero	INTERGENIC
SBS	Chr5	20342027	T-C	Hetero	INTERGENIC
SBS	Chr6	6974477	T-G	Homo	INTERGENIC
SBS	Chr7	8817824	C-T	Hetero	INTERGENIC
SBS	Chr7	11015051	T-G	Hetero	INTERGENIC
SBS	Chr7	24493158	G-A	Hetero	INTERGENIC
SBS	Chr7	24827529	C-A	Hetero	INTERGENIC
SBS	Chr8	3443675	G-A	Hetero	INTERGENIC
SBS	Chr8	18168946	G-C	Homo	INTERGENIC
SBS	Chr9	3302144	G-A	Hetero	INTERGENIC
SBS	Chr9	20213969	C-T	Hetero	INTERGENIC
SBS	Chr10	18418234	G-A	Hetero	INTERGENIC
SBS	Chr10	20074783	A-G	Hetero	INTERGENIC
SBS	Chr11	3398739	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	11101266	A-T	Hetero	INTERGENIC
SBS	Chr11	11176867	A-G	Hetero	INTERGENIC
SBS	Chr11	12305580	C-G	Hetero	INTERGENIC
SBS	Chr11	25791940	C-T	Homo	INTERGENIC
SBS	Chr12	11313794	T-C	Hetero	INTERGENIC
SBS	Chr12	18921395	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	4391340	4391344	4
Deletion	Chr3	5768147	5768172	25	OsKitaake03g081700
Deletion	Chr4	9893435	9893437	2
Deletion	Chr4	10067669	10067684	15
Deletion	Chr7	13883391	13883393	2
Deletion	Chr4	14458180	14458190	10
Deletion	Chr7	14473606	14473608	2
Deletion	Chr8	14643705	14643709	4
Deletion	Chr4	17476001	17495000	18999	4
Deletion	Chr12	19016420	19016421	1
Deletion	Chr11	19991062	19991064	2
Deletion	Chr7	20361308	20361311	3
Deletion	Chr3	24842323	24842333	10
Deletion	Chr1	25323645	25323651	6
Deletion	Chr4	26445857	26445869	12	OsKitaake04g189700
Deletion	Chr2	27539645	27539647	2
Deletion	Chr2	30395956	30395959	3

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes