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| Mutant Information |
|---|
| Mutant Name | FN2337 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2337 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5522993 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13439500 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24323120 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 28569735 | T-G | Hetero | INTRON | |
| SBS | Chr1 | 39403844 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6519080 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 6709769 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12587732 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 22134150 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 34334231 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 11492235 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 12316481 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19200696 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 35476813 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 36929823 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3655627 | G-C | Hetero | INTRON | |
| SBS | Chr4 | 10337331 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12165436 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7889589 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 11903067 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 26320218 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4009018 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13519589 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5416559 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 7530670 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15958673 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2902349 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17101750 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17449943 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21943832 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26222423 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr9 | 10290964 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 22126026 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g199100 |
| SBS | Chr10 | 6829501 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 723288 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1586344 | A-T | Hetero | STOP_GAINED | OsKitaake11g020900 |
| SBS | Chr11 | 2068324 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 10056389 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 18387564 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20614808 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 20140130 | C-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 1601152 | 1601158 | 6 | |
| Deletion | Chr1 | 14234169 | 14234172 | 3 | |
| Deletion | Chr7 | 14808101 | 14808103 | 2 | |
| Deletion | Chr3 | 34364595 | 34364608 | 13 | OsKitaake03g372800 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 29461455 | 29461458 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 11934431 | 12167140 | |
| Inversion | Chr4 | 11934438 | 12167149 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 7709238 | Chr2 | 33730899 | OsKitaake02g348900 |
| Translocation | Chr11 | 18387187 | Chr8 | 4528227 | OsKitaake08g051100 |
| Translocation | Chr11 | 20802877 | Chr2 | 33708412 | OsKitaake02g348600 |
| Translocation | Chr11 | 20803550 | Chr8 | 7709227 |