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| Mutant Information |
|---|
| Mutant Name | FN2338 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2338 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 38343712 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 32132851 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1091902 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 2053785 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 2436570 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 3005334 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6205270 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18459093 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 23242686 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33057335 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10420563 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20119278 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 28777171 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 8195651 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12541788 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 19661054 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g176500 |
| SBS | Chr6 | 28928040 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 14013764 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 19813345 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 4590759 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6045498 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8275338 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 14988645 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 21437190 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15224153 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15413225 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17343077 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 20288147 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 7887830 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 1748076 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 10376135 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12026938 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12739206 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 14512042 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13679893 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g112700 |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2621910 | 2621925 | 15 | |
| Deletion | Chr2 | 8134623 | 8134624 | 1 | OsKitaake02g104200 |
| Deletion | Chr10 | 11705855 | 11705858 | 3 | |
| Deletion | Chr8 | 12326420 | 12326425 | 5 | |
| Deletion | Chr2 | 14006036 | 14006041 | 5 | |
| Deletion | Chr11 | 17928253 | 17928254 | 1 | |
| Deletion | Chr12 | 18482326 | 18482330 | 4 | |
| Deletion | Chr6 | 20644572 | 20644596 | 24 | |
| Deletion | Chr3 | 20702454 | 20702458 | 4 | |
| Deletion | Chr6 | 22111838 | 22111843 | 5 | |
| Deletion | Chr1 | 26588174 | 26588175 | 1 | |
| Deletion | Chr11 | 27095702 | 27095703 | 1 | |
| Deletion | Chr6 | 28953068 | 28953072 | 4 | |
| Deletion | Chr2 | 29743375 | 29743380 | 5 | OsKitaake02g300800 |
| Deletion | Chr2 | 29914151 | 29914152 | 1 | |
| Deletion | Chr4 | 32444497 | 32444506 | 9 | |
| Deletion | Chr4 | 35714510 | 35714520 | 10 |
Insertions: 5
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 24722666 | 25174659 | OsKitaake05g219100 |
| Inversion | Chr1 | 30493783 | 30516512 | OsKitaake01g301800 |
| Inversion | Chr1 | 30493792 | 30516522 | OsKitaake01g301800 |
| Inversion | Chr3 | 32317511 | 32445145 | OsKitaake03g343500 |
| Inversion | Chr1 | 39003385 | 39221876 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 15752434 | Chr9 | 20759228 | 2 |
| Translocation | Chr10 | 15753787 | Chr9 | 20759234 | OsKitaake09g176600 |