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Mutant Information

Mutant Name	FN2339 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2339 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4854576 G-A Homo INTERGENIC
SBS Chr1 32385335 C-T Hetero INTERGENIC
SBS Chr1 37603559 T-A Hetero INTERGENIC
SBS Chr1 39530757 C-T Hetero INTERGENIC
SBS Chr2 14181000 T-C Hetero INTERGENIC
SBS Chr2 20012262 A-G Homo UTR_5_PRIME
SBS Chr2 26717206 T-G Homo NON_SYNONYMOUS_CODING OsKitaake02g267100
SBS Chr2 31731997 G-A Hetero INTRON
SBS Chr3 14982643 C-T Hetero INTERGENIC
SBS Chr3 26230028 C-A Homo INTERGENIC
SBS Chr3 27397135 G-A Hetero INTERGENIC
SBS Chr3 27718433 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g286600
SBS Chr5 19073318 C-T Hetero UTR_5_PRIME
SBS Chr5 19290924 G-A Hetero INTRON
SBS Chr5 25248454 C-T Homo INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr6 29544490 A-G Homo INTRON
SBS Chr7 8135252 C-T Hetero INTERGENIC
SBS Chr7 22724316 A-T Homo INTERGENIC
SBS Chr7 24612619 G-A Hetero INTERGENIC
SBS Chr8 12386405 C-T Homo INTERGENIC
SBS Chr8 18229428 G-A Hetero INTERGENIC
SBS Chr8 23504355 G-A Hetero INTERGENIC
SBS Chr8 25139473 T-C Hetero INTERGENIC
SBS Chr10 1507022 G-A Hetero INTERGENIC
SBS Chr10 13846291 C-T Hetero INTERGENIC
SBS Chr10 16554036 A-G Hetero INTERGENIC
SBS Chr11 8662226 A-G Hetero INTERGENIC
SBS Chr11 14594833 T-G Hetero INTERGENIC
SBS Chr11 17514177 C-A Hetero INTRON
SBS Chr11 24919192 C-T Hetero INTERGENIC
SBS Chr12 10144127 T-A Hetero INTERGENIC
SBS Chr12 21740232 T-C Hetero INTERGENIC
SBS Chr12 24286066 A-G Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 466670 466672 2
Deletion Chr4 7221301 7221312 11
Deletion Chr11 12141766 12141769 3
Deletion Chr2 14874017 14874019 2
Deletion Chr11 15423989 15423990 1
Deletion Chr12 18406955 18406961 6
Deletion Chr1 23969522 23969523 1
Deletion Chr12 24286464 24286476 12
Deletion Chr1 25814380 25814383 3
Deletion Chr3 30278162 30278163 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19257882 19257885 2
Insertion Chr5 30226856 30226864 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 24952529 24954895
Inversion Chr3 24952538 24954899

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4854576	G-A	Homo	INTERGENIC
SBS	Chr1	32385335	C-T	Hetero	INTERGENIC
SBS	Chr1	37603559	T-A	Hetero	INTERGENIC
SBS	Chr1	39530757	C-T	Hetero	INTERGENIC
SBS	Chr2	14181000	T-C	Hetero	INTERGENIC
SBS	Chr2	20012262	A-G	Homo	UTR_5_PRIME
SBS	Chr2	26717206	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g267100
SBS	Chr2	31731997	G-A	Hetero	INTRON
SBS	Chr3	14982643	C-T	Hetero	INTERGENIC
SBS	Chr3	26230028	C-A	Homo	INTERGENIC
SBS	Chr3	27397135	G-A	Hetero	INTERGENIC
SBS	Chr3	27718433	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g286600
SBS	Chr5	19073318	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	19290924	G-A	Hetero	INTRON
SBS	Chr5	25248454	C-T	Homo	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr6	29544490	A-G	Homo	INTRON
SBS	Chr7	8135252	C-T	Hetero	INTERGENIC
SBS	Chr7	22724316	A-T	Homo	INTERGENIC
SBS	Chr7	24612619	G-A	Hetero	INTERGENIC
SBS	Chr8	12386405	C-T	Homo	INTERGENIC
SBS	Chr8	18229428	G-A	Hetero	INTERGENIC
SBS	Chr8	23504355	G-A	Hetero	INTERGENIC
SBS	Chr8	25139473	T-C	Hetero	INTERGENIC
SBS	Chr10	1507022	G-A	Hetero	INTERGENIC
SBS	Chr10	13846291	C-T	Hetero	INTERGENIC
SBS	Chr10	16554036	A-G	Hetero	INTERGENIC
SBS	Chr11	8662226	A-G	Hetero	INTERGENIC
SBS	Chr11	14594833	T-G	Hetero	INTERGENIC
SBS	Chr11	17514177	C-A	Hetero	INTRON
SBS	Chr11	24919192	C-T	Hetero	INTERGENIC
SBS	Chr12	10144127	T-A	Hetero	INTERGENIC
SBS	Chr12	21740232	T-C	Hetero	INTERGENIC
SBS	Chr12	24286066	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	466670	466672	2
Deletion	Chr4	7221301	7221312	11
Deletion	Chr11	12141766	12141769	3
Deletion	Chr2	14874017	14874019	2
Deletion	Chr11	15423989	15423990	1
Deletion	Chr12	18406955	18406961	6
Deletion	Chr1	23969522	23969523	1
Deletion	Chr12	24286464	24286476	12
Deletion	Chr1	25814380	25814383	3
Deletion	Chr3	30278162	30278163	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24952529	24954895
Inversion	Chr3	24952538	24954899

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes