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Mutant Information

Mutant Name	FN2340 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2340 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3609042 T-C Hetero INTERGENIC
SBS Chr1 4368534 A-G Hetero INTRON
SBS Chr1 4758201 T-C Hetero INTERGENIC
SBS Chr1 12299038 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g149200
SBS Chr1 12347198 T-C Hetero INTERGENIC
SBS Chr1 17102499 G-C Hetero INTERGENIC
SBS Chr1 19032515 G-T Hetero INTERGENIC
SBS Chr1 19530285 C-A Hetero UTR_3_PRIME
SBS Chr1 20515407 C-T Hetero INTERGENIC
SBS Chr1 25180640 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g243600
SBS Chr1 31235089 G-A Homo INTERGENIC
SBS Chr1 33124570 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g338100
SBS Chr1 38848699 G-A Homo INTERGENIC
SBS Chr2 19789324 T-C Homo INTERGENIC
SBS Chr2 33158430 G-A Hetero INTERGENIC
SBS Chr3 9670224 T-A Hetero INTERGENIC
SBS Chr3 19944595 A-G Hetero INTERGENIC
SBS Chr4 14565645 G-A Hetero INTERGENIC
SBS Chr4 15300700 C-T Hetero INTERGENIC
SBS Chr4 23227712 C-T Hetero INTERGENIC
SBS Chr5 844765 G-A Homo INTERGENIC
SBS Chr5 2869993 G-A Homo INTRON
SBS Chr5 2869994 A-T Homo INTRON
SBS Chr5 4619726 G-A Hetero INTERGENIC
SBS Chr5 10276424 C-A Hetero INTERGENIC
SBS Chr5 24814545 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 24919445 C-A Hetero INTERGENIC
SBS Chr6 18579934 G-A Homo INTERGENIC
SBS Chr7 6082701 G-C Homo INTERGENIC
SBS Chr7 14755510 G-A Hetero INTERGENIC
SBS Chr7 14986822 C-T Homo INTERGENIC
SBS Chr7 27084079 G-C Hetero INTERGENIC
SBS Chr8 17055488 C-A Hetero INTERGENIC
SBS Chr8 25808699 G-A Hetero INTERGENIC
SBS Chr9 4884002 G-A Hetero INTERGENIC
SBS Chr9 16607440 A-T Homo INTERGENIC
SBS Chr10 8040007 A-T Hetero INTERGENIC
SBS Chr11 5653722 T-C Homo INTERGENIC
SBS Chr11 8858468 T-C Homo INTERGENIC
SBS Chr11 21676509 G-A Homo INTERGENIC
SBS Chr12 2478472 G-C Hetero INTRON
SBS Chr12 6835932 G-T Hetero UTR_5_PRIME
SBS Chr12 17854635 A-T Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2605132 2605133 1
Deletion Chr4 6323618 6323622 4 OsKitaake04g031700
Deletion Chr1 6750462 6750465 3
Deletion Chr7 7610553 7610560 7
Deletion Chr11 9781623 9781624 1 OsKitaake11g100800
Deletion Chr9 11476120 11476122 2
Deletion Chr11 15211757 15211767 10
Deletion Chr3 17561218 17561222 4
Deletion Chr12 18197206 18197217 11
Deletion Chr8 22731029 22731034 5
Deletion Chr2 22910252 22910255 3
Deletion Chr7 23314564 23314570 6
Deletion Chr2 27500507 27500517 10
Deletion Chr2 30018706 30018712 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21174064 21174068 3
Insertion Chr6 5627146 5627149 2
Insertion Chr3 9084393 9084398 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 4485872 4604783
Inversion Chr11 4485878 4604801
Inversion Chr1 17743957 17777529 OsKitaake01g180850
Inversion Chr1 17777536 17950309 OsKitaake01g180850

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3609042	T-C	Hetero	INTERGENIC
SBS	Chr1	4368534	A-G	Hetero	INTRON
SBS	Chr1	4758201	T-C	Hetero	INTERGENIC
SBS	Chr1	12299038	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g149200
SBS	Chr1	12347198	T-C	Hetero	INTERGENIC
SBS	Chr1	17102499	G-C	Hetero	INTERGENIC
SBS	Chr1	19032515	G-T	Hetero	INTERGENIC
SBS	Chr1	19530285	C-A	Hetero	UTR_3_PRIME
SBS	Chr1	20515407	C-T	Hetero	INTERGENIC
SBS	Chr1	25180640	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g243600
SBS	Chr1	31235089	G-A	Homo	INTERGENIC
SBS	Chr1	33124570	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g338100
SBS	Chr1	38848699	G-A	Homo	INTERGENIC
SBS	Chr2	19789324	T-C	Homo	INTERGENIC
SBS	Chr2	33158430	G-A	Hetero	INTERGENIC
SBS	Chr3	9670224	T-A	Hetero	INTERGENIC
SBS	Chr3	19944595	A-G	Hetero	INTERGENIC
SBS	Chr4	14565645	G-A	Hetero	INTERGENIC
SBS	Chr4	15300700	C-T	Hetero	INTERGENIC
SBS	Chr4	23227712	C-T	Hetero	INTERGENIC
SBS	Chr5	844765	G-A	Homo	INTERGENIC
SBS	Chr5	2869993	G-A	Homo	INTRON
SBS	Chr5	2869994	A-T	Homo	INTRON
SBS	Chr5	4619726	G-A	Hetero	INTERGENIC
SBS	Chr5	10276424	C-A	Hetero	INTERGENIC
SBS	Chr5	24814545	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	24919445	C-A	Hetero	INTERGENIC
SBS	Chr6	18579934	G-A	Homo	INTERGENIC
SBS	Chr7	6082701	G-C	Homo	INTERGENIC
SBS	Chr7	14755510	G-A	Hetero	INTERGENIC
SBS	Chr7	14986822	C-T	Homo	INTERGENIC
SBS	Chr7	27084079	G-C	Hetero	INTERGENIC
SBS	Chr8	17055488	C-A	Hetero	INTERGENIC
SBS	Chr8	25808699	G-A	Hetero	INTERGENIC
SBS	Chr9	4884002	G-A	Hetero	INTERGENIC
SBS	Chr9	16607440	A-T	Homo	INTERGENIC
SBS	Chr10	8040007	A-T	Hetero	INTERGENIC
SBS	Chr11	5653722	T-C	Homo	INTERGENIC
SBS	Chr11	8858468	T-C	Homo	INTERGENIC
SBS	Chr11	21676509	G-A	Homo	INTERGENIC
SBS	Chr12	2478472	G-C	Hetero	INTRON
SBS	Chr12	6835932	G-T	Hetero	UTR_5_PRIME
SBS	Chr12	17854635	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2605132	2605133	1
Deletion	Chr4	6323618	6323622	4	OsKitaake04g031700
Deletion	Chr1	6750462	6750465	3
Deletion	Chr7	7610553	7610560	7
Deletion	Chr11	9781623	9781624	1	OsKitaake11g100800
Deletion	Chr9	11476120	11476122	2
Deletion	Chr11	15211757	15211767	10
Deletion	Chr3	17561218	17561222	4
Deletion	Chr12	18197206	18197217	11
Deletion	Chr8	22731029	22731034	5
Deletion	Chr2	22910252	22910255	3
Deletion	Chr7	23314564	23314570	6
Deletion	Chr2	27500507	27500517	10
Deletion	Chr2	30018706	30018712	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4485872	4604783
Inversion	Chr11	4485878	4604801
Inversion	Chr1	17743957	17777529	OsKitaake01g180850
Inversion	Chr1	17777536	17950309	OsKitaake01g180850

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes