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Mutant Information

Mutant Name	FN2342 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2342 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5069241 A-T Homo INTERGENIC
SBS Chr1 5069242 A-T Homo INTERGENIC
SBS Chr1 18402919 C-A Homo INTERGENIC
SBS Chr1 26969209 G-A Hetero INTERGENIC
SBS Chr1 43242777 C-T Hetero INTERGENIC
SBS Chr2 580441 G-A Hetero UTR_3_PRIME
SBS Chr2 1270111 G-T Homo UTR_3_PRIME
SBS Chr2 1270112 G-T Homo UTR_3_PRIME
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr2 29594411 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g298600
SBS Chr2 33422665 T-A Hetero INTERGENIC
SBS Chr2 36348408 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g385000
SBS Chr3 21603934 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 23894986 T-C Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 34591932 C-G Homo INTERGENIC
SBS Chr3 35002308 T-A Homo INTERGENIC
SBS Chr4 4359654 T-C Homo INTERGENIC
SBS Chr4 9110028 G-A Hetero INTERGENIC
SBS Chr4 15760639 G-T Homo INTERGENIC
SBS Chr4 17172413 T-C Homo INTERGENIC
SBS Chr4 24852057 G-T Homo INTERGENIC
SBS Chr5 9029861 C-T Homo INTERGENIC
SBS Chr5 26717232 G-A Homo INTERGENIC
SBS Chr7 2590324 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g034100
SBS Chr7 14253222 G-C Hetero INTRON
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr8 10042466 C-T Hetero INTERGENIC
SBS Chr8 10042468 G-A Hetero INTERGENIC
SBS Chr8 10042470 C-T Hetero INTERGENIC
SBS Chr8 13085133 G-A Hetero INTERGENIC
SBS Chr9 18550950 C-T Hetero INTERGENIC
SBS Chr9 20167612 C-T Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 5986910 G-T Hetero INTERGENIC
SBS Chr11 11978669 C-A Hetero INTERGENIC
SBS Chr11 21002410 T-A Hetero INTERGENIC
SBS Chr12 7961211 C-T Homo INTERGENIC
SBS Chr12 9112561 G-A Hetero INTERGENIC
SBS Chr12 16473320 A-C Hetero INTERGENIC
SBS Chr12 17538044 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3461072 3461075 3
Deletion Chr7 4430244 4430260 16
Deletion Chr8 5255130 5255132 2
Deletion Chr10 5675650 5675665 15
Deletion Chr4 8259925 8259931 6
Deletion Chr9 8779925 8780016 91
Deletion Chr5 18309650 18309666 16
Deletion Chr8 21698478 21698502 24 OsKitaake08g163900
Deletion Chr5 28127691 28127695 4 OsKitaake05g260200
Deletion Chr3 34616755 34616775 20 OsKitaake03g376200
Deletion Chr3 34917001 35001000 83999 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5069241	A-T	Homo	INTERGENIC
SBS	Chr1	5069242	A-T	Homo	INTERGENIC
SBS	Chr1	18402919	C-A	Homo	INTERGENIC
SBS	Chr1	26969209	G-A	Hetero	INTERGENIC
SBS	Chr1	43242777	C-T	Hetero	INTERGENIC
SBS	Chr2	580441	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	1270111	G-T	Homo	UTR_3_PRIME
SBS	Chr2	1270112	G-T	Homo	UTR_3_PRIME
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr2	29594411	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g298600
SBS	Chr2	33422665	T-A	Hetero	INTERGENIC
SBS	Chr2	36348408	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g385000
SBS	Chr3	21603934	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	23894986	T-C	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	34591932	C-G	Homo	INTERGENIC
SBS	Chr3	35002308	T-A	Homo	INTERGENIC
SBS	Chr4	4359654	T-C	Homo	INTERGENIC
SBS	Chr4	9110028	G-A	Hetero	INTERGENIC
SBS	Chr4	15760639	G-T	Homo	INTERGENIC
SBS	Chr4	17172413	T-C	Homo	INTERGENIC
SBS	Chr4	24852057	G-T	Homo	INTERGENIC
SBS	Chr5	9029861	C-T	Homo	INTERGENIC
SBS	Chr5	26717232	G-A	Homo	INTERGENIC
SBS	Chr7	2590324	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g034100
SBS	Chr7	14253222	G-C	Hetero	INTRON
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr8	10042466	C-T	Hetero	INTERGENIC
SBS	Chr8	10042468	G-A	Hetero	INTERGENIC
SBS	Chr8	10042470	C-T	Hetero	INTERGENIC
SBS	Chr8	13085133	G-A	Hetero	INTERGENIC
SBS	Chr9	18550950	C-T	Hetero	INTERGENIC
SBS	Chr9	20167612	C-T	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	5986910	G-T	Hetero	INTERGENIC
SBS	Chr11	11978669	C-A	Hetero	INTERGENIC
SBS	Chr11	21002410	T-A	Hetero	INTERGENIC
SBS	Chr12	7961211	C-T	Homo	INTERGENIC
SBS	Chr12	9112561	G-A	Hetero	INTERGENIC
SBS	Chr12	16473320	A-C	Hetero	INTERGENIC
SBS	Chr12	17538044	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3461072	3461075	3
Deletion	Chr7	4430244	4430260	16
Deletion	Chr8	5255130	5255132	2
Deletion	Chr10	5675650	5675665	15
Deletion	Chr4	8259925	8259931	6
Deletion	Chr9	8779925	8780016	91
Deletion	Chr5	18309650	18309666	16
Deletion	Chr8	21698478	21698502	24	OsKitaake08g163900
Deletion	Chr5	28127691	28127695	4	OsKitaake05g260200
Deletion	Chr3	34616755	34616775	20	OsKitaake03g376200
Deletion	Chr3	34917001	35001000	83999	14

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes