Search Kitaake

Mutant Information

Mutant Name	FN2344 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2344 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13224084 C-G Hetero INTERGENIC
SBS Chr2 4427811 G-A Homo INTERGENIC
SBS Chr2 4614511 T-A Homo INTERGENIC
SBS Chr2 11368504 C-T Hetero INTERGENIC
SBS Chr2 14840435 C-G Homo INTERGENIC
SBS Chr2 18393306 C-T Hetero INTERGENIC
SBS Chr4 7344790 G-T Hetero INTERGENIC
SBS Chr4 14533311 A-C Homo INTERGENIC
SBS Chr5 888645 G-A Hetero INTERGENIC
SBS Chr5 9020466 C-T Hetero INTERGENIC
SBS Chr6 7683985 A-C Hetero INTERGENIC
SBS Chr7 1046507 A-G Hetero INTERGENIC
SBS Chr7 4575199 G-T Hetero UTR_3_PRIME
SBS Chr7 29094795 T-A Hetero INTRON
SBS Chr8 8273452 C-T Homo INTERGENIC
SBS Chr8 12783227 G-C Hetero INTERGENIC
SBS Chr8 26695061 G-A Hetero UTR_5_PRIME
SBS Chr8 28801018 A-T Hetero INTRON
SBS Chr10 100235 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g000600
SBS Chr10 13448990 G-A Homo INTERGENIC
SBS Chr10 14107156 G-A Hetero INTERGENIC
SBS Chr11 1074448 A-T Hetero INTERGENIC
SBS Chr11 1568498 T-C Hetero INTERGENIC
SBS Chr11 15971199 C-T Hetero INTERGENIC
SBS Chr11 15971597 A-G Hetero INTERGENIC
SBS Chr11 15978408 G-T Hetero INTERGENIC
SBS Chr11 20484970 G-A Hetero INTERGENIC
SBS Chr11 21729029 C-A Homo INTERGENIC
SBS Chr12 20469045 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 643001 653000 9999 4
Deletion Chr3 3207451 3207454 3
Deletion Chr8 5700121 5700129 8
Deletion Chr4 7322001 7347000 24999 OsKitaake04g037400
Deletion Chr8 7364130 7364137 7
Deletion Chr5 11839304 11839306 2
Deletion Chr4 12111868 12111873 5
Deletion Chr4 12287506 12287514 8
Deletion Chr10 12702441 12702448 7
Deletion Chr8 14406838 14406842 4
Deletion Chr6 17704568 17704571 3
Deletion Chr6 17837636 17837638 2
Deletion Chr10 17945386 17945392 6
Deletion Chr6 18549143 18549145 2
Deletion Chr6 23689890 23689895 5 OsKitaake06g208600
Deletion Chr5 25443001 25544000 100999 15
Deletion Chr7 28952023 28952025 2
Deletion Chr6 30265596 30265608 12
Deletion Chr1 31262584 31262592 8
Deletion Chr1 32539375 32539383 8 OsKitaake01g329800

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32299490 32299493 2
Insertion Chr2 8187692 8187695 2
Insertion Chr4 1825699 1825702 2
Insertion Chr11 15644989 15644992 2
Insertion Chr12 11748170 11748173 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 21730478 21985553 OsKitaake11g172400
Inversion Chr11 21730497 21993334 OsKitaake11g172400
Inversion Chr11 21985567 22887493 OsKitaake11g181200
Inversion Chr11 21986325 22528839
Inversion Chr11 22314581 22536054 2
Inversion Chr11 22314590 22528839 OsKitaake11g176900
Inversion Chr5 25440462 25825563 2
Inversion Chr5 25825570 25900911 OsKitaake05g227400

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 27405925 Chr6 4622663 OsKitaake08g225600
Translocation Chr8 27405936 Chr6 4619585 OsKitaake08g225600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13224084	C-G	Hetero	INTERGENIC
SBS	Chr2	4427811	G-A	Homo	INTERGENIC
SBS	Chr2	4614511	T-A	Homo	INTERGENIC
SBS	Chr2	11368504	C-T	Hetero	INTERGENIC
SBS	Chr2	14840435	C-G	Homo	INTERGENIC
SBS	Chr2	18393306	C-T	Hetero	INTERGENIC
SBS	Chr4	7344790	G-T	Hetero	INTERGENIC
SBS	Chr4	14533311	A-C	Homo	INTERGENIC
SBS	Chr5	888645	G-A	Hetero	INTERGENIC
SBS	Chr5	9020466	C-T	Hetero	INTERGENIC
SBS	Chr6	7683985	A-C	Hetero	INTERGENIC
SBS	Chr7	1046507	A-G	Hetero	INTERGENIC
SBS	Chr7	4575199	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	29094795	T-A	Hetero	INTRON
SBS	Chr8	8273452	C-T	Homo	INTERGENIC
SBS	Chr8	12783227	G-C	Hetero	INTERGENIC
SBS	Chr8	26695061	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	28801018	A-T	Hetero	INTRON
SBS	Chr10	100235	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g000600
SBS	Chr10	13448990	G-A	Homo	INTERGENIC
SBS	Chr10	14107156	G-A	Hetero	INTERGENIC
SBS	Chr11	1074448	A-T	Hetero	INTERGENIC
SBS	Chr11	1568498	T-C	Hetero	INTERGENIC
SBS	Chr11	15971199	C-T	Hetero	INTERGENIC
SBS	Chr11	15971597	A-G	Hetero	INTERGENIC
SBS	Chr11	15978408	G-T	Hetero	INTERGENIC
SBS	Chr11	20484970	G-A	Hetero	INTERGENIC
SBS	Chr11	21729029	C-A	Homo	INTERGENIC
SBS	Chr12	20469045	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	643001	653000	9999	4
Deletion	Chr3	3207451	3207454	3
Deletion	Chr8	5700121	5700129	8
Deletion	Chr4	7322001	7347000	24999	OsKitaake04g037400
Deletion	Chr8	7364130	7364137	7
Deletion	Chr5	11839304	11839306	2
Deletion	Chr4	12111868	12111873	5
Deletion	Chr4	12287506	12287514	8
Deletion	Chr10	12702441	12702448	7
Deletion	Chr8	14406838	14406842	4
Deletion	Chr6	17704568	17704571	3
Deletion	Chr6	17837636	17837638	2
Deletion	Chr10	17945386	17945392	6
Deletion	Chr6	18549143	18549145	2
Deletion	Chr6	23689890	23689895	5	OsKitaake06g208600
Deletion	Chr5	25443001	25544000	100999	15
Deletion	Chr7	28952023	28952025	2
Deletion	Chr6	30265596	30265608	12
Deletion	Chr1	31262584	31262592	8
Deletion	Chr1	32539375	32539383	8	OsKitaake01g329800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	21730478	21985553	OsKitaake11g172400
Inversion	Chr11	21730497	21993334	OsKitaake11g172400
Inversion	Chr11	21985567	22887493	OsKitaake11g181200
Inversion	Chr11	21986325	22528839
Inversion	Chr11	22314581	22536054	2
Inversion	Chr11	22314590	22528839	OsKitaake11g176900
Inversion	Chr5	25440462	25825563	2
Inversion	Chr5	25825570	25900911	OsKitaake05g227400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes