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Mutant Information

Mutant Name	FN2345 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2345 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7447712 T-A Homo INTERGENIC
SBS Chr2 10011124 C-A Hetero INTERGENIC
SBS Chr2 11219407 T-A Hetero UTR_5_PRIME
SBS Chr3 9707748 C-A Hetero INTERGENIC
SBS Chr3 9707750 T-C Hetero INTERGENIC
SBS Chr3 17248871 G-T Hetero INTERGENIC
SBS Chr4 11379093 G-A Homo INTERGENIC
SBS Chr4 16376633 C-A Hetero INTERGENIC
SBS Chr4 19048403 C-G Homo INTERGENIC
SBS Chr4 25529499 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g175900
SBS Chr4 36945674 G-A Hetero INTERGENIC
SBS Chr6 13372950 C-T Hetero INTERGENIC
SBS Chr6 18806565 C-T Hetero INTERGENIC
SBS Chr6 19296810 T-G Hetero INTERGENIC
SBS Chr6 30447986 T-A Hetero INTERGENIC
SBS Chr7 1769991 T-G Homo INTRON
SBS Chr7 2118962 C-T Homo UTR_3_PRIME
SBS Chr7 10704199 G-T Hetero INTERGENIC
SBS Chr7 15224040 T-G Hetero INTERGENIC
SBS Chr7 20177406 A-G Homo INTERGENIC
SBS Chr8 23799191 T-A Homo INTERGENIC
SBS Chr8 28473778 T-A Hetero INTERGENIC
SBS Chr9 542607 T-C Hetero INTERGENIC
SBS Chr9 5255530 T-C Homo INTERGENIC
SBS Chr9 5520634 A-G Homo INTERGENIC
SBS Chr11 3069933 G-C Homo UTR_3_PRIME
SBS Chr11 17143310 A-G Homo INTERGENIC
SBS Chr11 24459070 G-A Homo INTERGENIC
SBS Chr12 3049292 G-A Homo INTERGENIC
SBS Chr12 21962897 A-G Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2376187 2376196 9
Deletion Chr2 3472678 3472680 2
Deletion Chr3 4256001 4286000 29999 7
Deletion Chr9 5888998 5889000 2
Deletion Chr1 7448083 7448092 9
Deletion Chr7 8350064 8350065 1
Deletion Chr5 8617138 8617142 4
Deletion Chr7 8633610 8633615 5
Deletion Chr3 8935512 8935517 5
Deletion Chr2 11219419 11219421 2
Deletion Chr3 11808001 11827000 18999 3
Deletion Chr3 12403174 12403185 11
Deletion Chr2 12583140 12583143 3
Deletion Chr5 15149474 15149476 2
Deletion Chr7 16304168 16304172 4
Deletion Chr12 17382182 17382208 26
Deletion Chr11 17915087 17915093 6
Deletion Chr11 18122918 18122921 3
Deletion Chr6 20890293 20890309 16
Deletion Chr7 21630821 21630828 7
Deletion Chr10 22185901 22185909 8
Deletion Chr6 23286045 23286057 12
Deletion Chr11 23299390 23299391 1
Deletion Chr5 24597672 24597678 6 OsKitaake05g200000
Deletion Chr1 24625010 24625011 1 OsKitaake01g237900
Deletion Chr1 29258028 29258040 12

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27254519 27254521 1
Insertion Chr4 16778739 16778744 4
Insertion Chr7 21907580 21907583 2
Insertion Chr9 13611238 13611241 2
Insertion Chr10 16897598 16897601 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 11804698 12022016 OsKitaake03g160400
Inversion Chr3 11804702 11898893 2
Inversion Chr3 11808584 11898886 2
Inversion Chr3 11825737 12022020
Inversion Chr7 21513975 22173808 OsKitaake07g187000
Inversion Chr7 21513983 22173813 OsKitaake07g187000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7447712	T-A	Homo	INTERGENIC
SBS	Chr2	10011124	C-A	Hetero	INTERGENIC
SBS	Chr2	11219407	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	9707748	C-A	Hetero	INTERGENIC
SBS	Chr3	9707750	T-C	Hetero	INTERGENIC
SBS	Chr3	17248871	G-T	Hetero	INTERGENIC
SBS	Chr4	11379093	G-A	Homo	INTERGENIC
SBS	Chr4	16376633	C-A	Hetero	INTERGENIC
SBS	Chr4	19048403	C-G	Homo	INTERGENIC
SBS	Chr4	25529499	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g175900
SBS	Chr4	36945674	G-A	Hetero	INTERGENIC
SBS	Chr6	13372950	C-T	Hetero	INTERGENIC
SBS	Chr6	18806565	C-T	Hetero	INTERGENIC
SBS	Chr6	19296810	T-G	Hetero	INTERGENIC
SBS	Chr6	30447986	T-A	Hetero	INTERGENIC
SBS	Chr7	1769991	T-G	Homo	INTRON
SBS	Chr7	2118962	C-T	Homo	UTR_3_PRIME
SBS	Chr7	10704199	G-T	Hetero	INTERGENIC
SBS	Chr7	15224040	T-G	Hetero	INTERGENIC
SBS	Chr7	20177406	A-G	Homo	INTERGENIC
SBS	Chr8	23799191	T-A	Homo	INTERGENIC
SBS	Chr8	28473778	T-A	Hetero	INTERGENIC
SBS	Chr9	542607	T-C	Hetero	INTERGENIC
SBS	Chr9	5255530	T-C	Homo	INTERGENIC
SBS	Chr9	5520634	A-G	Homo	INTERGENIC
SBS	Chr11	3069933	G-C	Homo	UTR_3_PRIME
SBS	Chr11	17143310	A-G	Homo	INTERGENIC
SBS	Chr11	24459070	G-A	Homo	INTERGENIC
SBS	Chr12	3049292	G-A	Homo	INTERGENIC
SBS	Chr12	21962897	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2376187	2376196	9
Deletion	Chr2	3472678	3472680	2
Deletion	Chr3	4256001	4286000	29999	7
Deletion	Chr9	5888998	5889000	2
Deletion	Chr1	7448083	7448092	9
Deletion	Chr7	8350064	8350065	1
Deletion	Chr5	8617138	8617142	4
Deletion	Chr7	8633610	8633615	5
Deletion	Chr3	8935512	8935517	5
Deletion	Chr2	11219419	11219421	2
Deletion	Chr3	11808001	11827000	18999	3
Deletion	Chr3	12403174	12403185	11
Deletion	Chr2	12583140	12583143	3
Deletion	Chr5	15149474	15149476	2
Deletion	Chr7	16304168	16304172	4
Deletion	Chr12	17382182	17382208	26
Deletion	Chr11	17915087	17915093	6
Deletion	Chr11	18122918	18122921	3
Deletion	Chr6	20890293	20890309	16
Deletion	Chr7	21630821	21630828	7
Deletion	Chr10	22185901	22185909	8
Deletion	Chr6	23286045	23286057	12
Deletion	Chr11	23299390	23299391	1
Deletion	Chr5	24597672	24597678	6	OsKitaake05g200000
Deletion	Chr1	24625010	24625011	1	OsKitaake01g237900
Deletion	Chr1	29258028	29258040	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	11804698	12022016	OsKitaake03g160400
Inversion	Chr3	11804702	11898893	2
Inversion	Chr3	11808584	11898886	2
Inversion	Chr3	11825737	12022020
Inversion	Chr7	21513975	22173808	OsKitaake07g187000
Inversion	Chr7	21513983	22173813	OsKitaake07g187000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes