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Mutant Information

Mutant Name	FN2347 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2347 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9147564 C-T Hetero INTERGENIC
SBS Chr1 9678544 A-T Homo INTERGENIC
SBS Chr1 11873183 A-T Homo INTERGENIC
SBS Chr1 12133292 C-T Homo INTERGENIC
SBS Chr1 13091388 A-C Homo INTERGENIC
SBS Chr1 33349718 G-A Hetero UTR_3_PRIME
SBS Chr1 38995315 T-C Hetero INTERGENIC
SBS Chr1 40440938 A-T Homo INTERGENIC
SBS Chr1 41415646 T-G Hetero INTERGENIC
SBS Chr2 13286975 G-A Homo INTERGENIC
SBS Chr2 16665476 A-T Hetero INTERGENIC
SBS Chr3 981921 G-A Hetero INTRON
SBS Chr3 13575734 G-A Hetero INTERGENIC
SBS Chr3 25179140 G-A Hetero UTR_3_PRIME
SBS Chr3 26177513 C-A Hetero INTERGENIC
SBS Chr3 28286880 C-A Homo INTRON
SBS Chr3 30247918 G-C Homo INTERGENIC
SBS Chr4 2168363 T-A Homo INTERGENIC
SBS Chr5 4316563 G-C Hetero INTERGENIC
SBS Chr5 25089810 C-T Hetero INTERGENIC
SBS Chr5 25453566 T-C Homo INTERGENIC
SBS Chr6 738664 C-T Hetero INTERGENIC
SBS Chr7 422557 G-A Homo INTERGENIC
SBS Chr7 14967307 C-T Homo INTERGENIC
SBS Chr8 7667183 G-A Homo INTERGENIC
SBS Chr9 13718512 T-C Hetero INTERGENIC
SBS Chr10 13240926 C-T Hetero INTERGENIC
SBS Chr10 21539322 G-T Hetero INTERGENIC
SBS Chr10 23009724 T-A Hetero INTERGENIC
SBS Chr11 2165879 G-A Homo INTERGENIC
SBS Chr11 2165880 A-T Homo INTERGENIC
SBS Chr11 2593382 G-T Homo INTERGENIC
SBS Chr11 10606907 G-A Homo INTERGENIC
SBS Chr11 12915296 A-G Homo INTERGENIC
SBS Chr12 2267064 C-T Homo INTERGENIC
SBS Chr12 3006926 C-T Hetero INTERGENIC
SBS Chr12 6903086 T-A Homo INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 877774 877779 5
Deletion Chr8 2231528 2231530 2
Deletion Chr6 5307564 5307571 7
Deletion Chr1 9023842 9023844 2
Deletion Chr10 13948947 13948948 1
Deletion Chr8 14335672 14335710 38
Deletion Chr3 15872490 15872495 5
Deletion Chr5 16071165 16071171 6
Deletion Chr1 21100498 21100499 1
Deletion Chr11 21541498 21541502 4 OsKitaake11g170001
Deletion Chr6 30883393 30883394 1 OsKitaake06g292300
Deletion Chr1 36500660 36500661 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34811335 34811337 1
Insertion Chr5 5510289 5510292 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 20957107 21138950 2
Inversion Chr2 20957117 21138953 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 733291 Chr1 12823945 2
Translocation Chr7 733304 Chr1 12823936 2
Translocation Chr7 8480186 Chr1 43991425
Translocation Chr8 12939392 Chr1 915398

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9147564	C-T	Hetero	INTERGENIC
SBS	Chr1	9678544	A-T	Homo	INTERGENIC
SBS	Chr1	11873183	A-T	Homo	INTERGENIC
SBS	Chr1	12133292	C-T	Homo	INTERGENIC
SBS	Chr1	13091388	A-C	Homo	INTERGENIC
SBS	Chr1	33349718	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	38995315	T-C	Hetero	INTERGENIC
SBS	Chr1	40440938	A-T	Homo	INTERGENIC
SBS	Chr1	41415646	T-G	Hetero	INTERGENIC
SBS	Chr2	13286975	G-A	Homo	INTERGENIC
SBS	Chr2	16665476	A-T	Hetero	INTERGENIC
SBS	Chr3	981921	G-A	Hetero	INTRON
SBS	Chr3	13575734	G-A	Hetero	INTERGENIC
SBS	Chr3	25179140	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	26177513	C-A	Hetero	INTERGENIC
SBS	Chr3	28286880	C-A	Homo	INTRON
SBS	Chr3	30247918	G-C	Homo	INTERGENIC
SBS	Chr4	2168363	T-A	Homo	INTERGENIC
SBS	Chr5	4316563	G-C	Hetero	INTERGENIC
SBS	Chr5	25089810	C-T	Hetero	INTERGENIC
SBS	Chr5	25453566	T-C	Homo	INTERGENIC
SBS	Chr6	738664	C-T	Hetero	INTERGENIC
SBS	Chr7	422557	G-A	Homo	INTERGENIC
SBS	Chr7	14967307	C-T	Homo	INTERGENIC
SBS	Chr8	7667183	G-A	Homo	INTERGENIC
SBS	Chr9	13718512	T-C	Hetero	INTERGENIC
SBS	Chr10	13240926	C-T	Hetero	INTERGENIC
SBS	Chr10	21539322	G-T	Hetero	INTERGENIC
SBS	Chr10	23009724	T-A	Hetero	INTERGENIC
SBS	Chr11	2165879	G-A	Homo	INTERGENIC
SBS	Chr11	2165880	A-T	Homo	INTERGENIC
SBS	Chr11	2593382	G-T	Homo	INTERGENIC
SBS	Chr11	10606907	G-A	Homo	INTERGENIC
SBS	Chr11	12915296	A-G	Homo	INTERGENIC
SBS	Chr12	2267064	C-T	Homo	INTERGENIC
SBS	Chr12	3006926	C-T	Hetero	INTERGENIC
SBS	Chr12	6903086	T-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	877774	877779	5
Deletion	Chr8	2231528	2231530	2
Deletion	Chr6	5307564	5307571	7
Deletion	Chr1	9023842	9023844	2
Deletion	Chr10	13948947	13948948	1
Deletion	Chr8	14335672	14335710	38
Deletion	Chr3	15872490	15872495	5
Deletion	Chr5	16071165	16071171	6
Deletion	Chr1	21100498	21100499	1
Deletion	Chr11	21541498	21541502	4	OsKitaake11g170001
Deletion	Chr6	30883393	30883394	1	OsKitaake06g292300
Deletion	Chr1	36500660	36500661	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	20957107	21138950	2
Inversion	Chr2	20957117	21138953	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes