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| Mutant Information |
|---|
| Mutant Name | FN2348 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2348 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1882286 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 29882137 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 5475582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19653459 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 34968841 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 15563761 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 25128558 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 26956507 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31922193 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g337300 |
| SBS | Chr3 | 32920990 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 7944888 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 30208111 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 191667 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g000800 |
| SBS | Chr6 | 8678770 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 26032804 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g232300 |
| SBS | Chr7 | 7698653 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 10663872 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12101568 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27352023 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 9994587 | G-T | Hetero | INTRON | |
| SBS | Chr9 | 20920096 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2192958 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 2328787 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 8899244 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 20121451 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 21247509 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5207016 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g065500 |
| SBS | Chr11 | 23947574 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9730740 | A-C | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 4712709 | 4712711 | 2 | |
| Deletion | Chr5 | 6954639 | 6954647 | 8 | |
| Deletion | Chr5 | 12393707 | 12393708 | 1 | |
| Deletion | Chr11 | 14776262 | 14776266 | 4 | |
| Deletion | Chr5 | 15689001 | 15813000 | 123999 | 9 |
| Deletion | Chr3 | 17474020 | 17474023 | 3 | |
| Deletion | Chr12 | 18684136 | 18684137 | 1 | OsKitaake12g137900 |
| Deletion | Chr8 | 20825395 | 20825396 | 1 | OsKitaake08g155700 |
| Deletion | Chr1 | 22364808 | 22364811 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 29292738 | 29292742 | 3 | |
| Insertion | Chr3 | 37293024 | 37293027 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 23949677 | 24761230 | OsKitaake11g201100 |
| Inversion | Chr11 | 23949713 | 24761231 | OsKitaake11g201100 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 3140745 | Chr6 | 7897553 | OsKitaake10g025600 |
| Translocation | Chr10 | 3140755 | Chr6 | 7897279 | OsKitaake10g025600 |
| Translocation | Chr5 | 15689039 | Chr4 | 20020593 | |
| Translocation | Chr5 | 15810549 | Chr4 | 20016775 | OsKitaake05g121600 |
| Translocation | Chr12 | 18502354 | Chr1 | 42251280 | |
| Translocation | Chr12 | 18506064 | Chr1 | 42251278 |