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Mutant Information

Mutant Name	FN2349 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2349 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2361538 G-A Hetero INTERGENIC
SBS Chr1 12277635 T-G Hetero INTERGENIC
SBS Chr1 37344588 G-A Hetero INTERGENIC
SBS Chr1 38165094 T-C Hetero INTERGENIC
SBS Chr1 40326293 T-C Hetero INTERGENIC
SBS Chr2 2194250 C-T Hetero INTERGENIC
SBS Chr2 13766820 G-T Homo INTERGENIC
SBS Chr2 14437443 A-C Hetero INTERGENIC
SBS Chr2 18613874 A-T Hetero INTERGENIC
SBS Chr2 18613878 A-T Hetero INTERGENIC
SBS Chr3 4725768 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g068500
SBS Chr3 4725769 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g068500
SBS Chr3 18586503 G-A Hetero INTERGENIC
SBS Chr3 18741342 T-C Hetero INTRON
SBS Chr3 19488537 A-T Hetero INTERGENIC
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr4 13659517 C-G Hetero INTERGENIC
SBS Chr4 25549671 C-G Homo NON_SYNONYMOUS_CODING OsKitaake04g176100
SBS Chr4 29075956 G-A Hetero INTERGENIC
SBS Chr5 6849696 T-A Hetero INTERGENIC
SBS Chr5 17287396 T-A Hetero INTERGENIC
SBS Chr5 25216704 G-A Hetero INTERGENIC
SBS Chr5 25980184 A-C Hetero INTRON
SBS Chr6 3324727 A-T Hetero INTRON
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 24914013 G-A Hetero INTERGENIC
SBS Chr7 16900891 G-A Homo INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr8 4092804 C-T Hetero INTERGENIC
SBS Chr8 5501740 C-A Homo INTERGENIC
SBS Chr8 18876082 C-T Homo SYNONYMOUS_CODING
SBS Chr8 21411653 T-A Homo INTERGENIC
SBS Chr9 3108416 T-A Hetero INTERGENIC
SBS Chr9 5049941 A-G Hetero INTERGENIC
SBS Chr9 15135555 G-A Homo INTERGENIC
SBS Chr12 6441092 C-T Hetero STOP_GAINED OsKitaake12g074200
SBS Chr12 8757657 G-A Hetero INTERGENIC
SBS Chr12 10555143 T-G Hetero INTRON
SBS Chr12 11723751 G-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3092266 3092267 1
Deletion Chr11 4938413 4938416 3
Deletion Chr8 5367671 5367674 3
Deletion Chr4 10352372 10352373 1
Deletion Chr5 12568202 12568212 10
Deletion Chr1 13191728 13191739 11 OsKitaake01g155600
Deletion Chr5 14766999 14767006 7
Deletion Chr2 20582328 20582347 19
Deletion Chr12 20835001 20851000 15999
Deletion Chr8 21393368 21393379 11
Deletion Chr6 22294358 22294394 36
Deletion Chr9 22300058 22300060 2
Deletion Chr6 22695799 22695801 2
Deletion Chr10 23506785 23506787 2
Deletion Chr3 26728244 26728245 1
Deletion Chr2 29670107 29670110 3
Deletion Chr1 39913062 39913064 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 948451 948453 1
Insertion Chr1 18775659 18775663 3
Insertion Chr4 24239994 24239997 2
Insertion Chr8 20109374 20109377 2
Insertion Chr9 11831814 11831817 2
Insertion Chr10 16862556 16862573 16

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4034283 4451031 2
Inversion Chr6 4034299 4451047 2
Inversion Chr5 5214828 6012154 OsKitaake05g058300
Inversion Chr5 5214850 5441750 OsKitaake05g058300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2361538	G-A	Hetero	INTERGENIC
SBS	Chr1	12277635	T-G	Hetero	INTERGENIC
SBS	Chr1	37344588	G-A	Hetero	INTERGENIC
SBS	Chr1	38165094	T-C	Hetero	INTERGENIC
SBS	Chr1	40326293	T-C	Hetero	INTERGENIC
SBS	Chr2	2194250	C-T	Hetero	INTERGENIC
SBS	Chr2	13766820	G-T	Homo	INTERGENIC
SBS	Chr2	14437443	A-C	Hetero	INTERGENIC
SBS	Chr2	18613874	A-T	Hetero	INTERGENIC
SBS	Chr2	18613878	A-T	Hetero	INTERGENIC
SBS	Chr3	4725768	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g068500
SBS	Chr3	4725769	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g068500
SBS	Chr3	18586503	G-A	Hetero	INTERGENIC
SBS	Chr3	18741342	T-C	Hetero	INTRON
SBS	Chr3	19488537	A-T	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr4	13659517	C-G	Hetero	INTERGENIC
SBS	Chr4	25549671	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g176100
SBS	Chr4	29075956	G-A	Hetero	INTERGENIC
SBS	Chr5	6849696	T-A	Hetero	INTERGENIC
SBS	Chr5	17287396	T-A	Hetero	INTERGENIC
SBS	Chr5	25216704	G-A	Hetero	INTERGENIC
SBS	Chr5	25980184	A-C	Hetero	INTRON
SBS	Chr6	3324727	A-T	Hetero	INTRON
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	24914013	G-A	Hetero	INTERGENIC
SBS	Chr7	16900891	G-A	Homo	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr8	4092804	C-T	Hetero	INTERGENIC
SBS	Chr8	5501740	C-A	Homo	INTERGENIC
SBS	Chr8	18876082	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	21411653	T-A	Homo	INTERGENIC
SBS	Chr9	3108416	T-A	Hetero	INTERGENIC
SBS	Chr9	5049941	A-G	Hetero	INTERGENIC
SBS	Chr9	15135555	G-A	Homo	INTERGENIC
SBS	Chr12	6441092	C-T	Hetero	STOP_GAINED	OsKitaake12g074200
SBS	Chr12	8757657	G-A	Hetero	INTERGENIC
SBS	Chr12	10555143	T-G	Hetero	INTRON
SBS	Chr12	11723751	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3092266	3092267	1
Deletion	Chr11	4938413	4938416	3
Deletion	Chr8	5367671	5367674	3
Deletion	Chr4	10352372	10352373	1
Deletion	Chr5	12568202	12568212	10
Deletion	Chr1	13191728	13191739	11	OsKitaake01g155600
Deletion	Chr5	14766999	14767006	7
Deletion	Chr2	20582328	20582347	19
Deletion	Chr12	20835001	20851000	15999
Deletion	Chr8	21393368	21393379	11
Deletion	Chr6	22294358	22294394	36
Deletion	Chr9	22300058	22300060	2
Deletion	Chr6	22695799	22695801	2
Deletion	Chr10	23506785	23506787	2
Deletion	Chr3	26728244	26728245	1
Deletion	Chr2	29670107	29670110	3
Deletion	Chr1	39913062	39913064	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4034283	4451031	2
Inversion	Chr6	4034299	4451047	2
Inversion	Chr5	5214828	6012154	OsKitaake05g058300
Inversion	Chr5	5214850	5441750	OsKitaake05g058300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes