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Mutant Information

Mutant Name	FN2350 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2350 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23621160 G-A Hetero INTERGENIC
SBS Chr1 27342978 C-T Hetero INTERGENIC
SBS Chr2 24296927 G-C Homo INTERGENIC
SBS Chr3 8483627 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g116200
SBS Chr3 29116684 C-A Hetero INTERGENIC
SBS Chr3 30137032 C-T Hetero INTERGENIC
SBS Chr4 8698333 A-G Hetero INTRON
SBS Chr4 18177459 T-C Hetero INTERGENIC
SBS Chr4 19447221 G-A Hetero INTERGENIC
SBS Chr4 21005115 T-C Hetero INTERGENIC
SBS Chr5 12554602 C-T Homo INTERGENIC
SBS Chr5 13094917 T-C Homo INTERGENIC
SBS Chr5 23595068 A-G Hetero INTERGENIC
SBS Chr5 27475922 G-C Hetero INTERGENIC
SBS Chr6 16022404 A-G Hetero INTERGENIC
SBS Chr6 18885907 G-A Hetero INTERGENIC
SBS Chr6 20819708 T-C Hetero INTERGENIC
SBS Chr6 23002680 C-T Hetero INTERGENIC
SBS Chr7 8062205 A-T Hetero INTERGENIC
SBS Chr7 12895605 A-T Homo INTERGENIC
SBS Chr7 20011206 A-C Homo NON_SYNONYMOUS_CODING OsKitaake07g163900
SBS Chr7 24168862 T-A Homo INTERGENIC
SBS Chr8 3352277 T-C Hetero INTERGENIC
SBS Chr9 4576514 A-T Hetero INTERGENIC
SBS Chr10 4468457 A-G Hetero INTERGENIC
SBS Chr10 6038479 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g041600
SBS Chr11 736599 C-T Hetero INTERGENIC
SBS Chr11 20011179 G-A Hetero INTERGENIC
SBS Chr12 10763082 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 205388 205395 7
Deletion Chr2 3001239 3001242 3
Deletion Chr2 3348299 3348319 20
Deletion Chr12 3728509 3728513 4 OsKitaake12g051900
Deletion Chr7 4594650 4594654 4
Deletion Chr8 4658069 4658071 2
Deletion Chr1 4887721 4887722 1
Deletion Chr5 5923460 5923483 23
Deletion Chr6 9129175 9129177 2
Deletion Chr4 11040106 11040109 3
Deletion Chr5 11176279 11176283 4
Deletion Chr12 12329084 12329103 19
Deletion Chr4 18212001 18345000 132999 5
Deletion Chr4 21816307 21816308 1
Deletion Chr5 22933055 22933070 15
Deletion Chr5 23208001 23389000 180999 24
Deletion Chr8 23797097 23797098 1
Deletion Chr3 26545014 26545017 3

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3973386 3973389 2
Insertion Chr3 32406136 32406139 2
Insertion Chr4 24570105 24570108 2
Insertion Chr6 19125021 19125024 2
Insertion Chr11 4053617 4053622 4
Insertion Chr12 288504 288507 2
Insertion Chr12 21275975 21275978 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 15381383 15971896 OsKitaake02g165600

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 735865 Chr3 22757697
Translocation Chr11 735873 Chr3 22757714
Translocation Chr6 11090514 Chr4 19044929
Translocation Chr6 11090984 Chr4 19044939
Translocation Chr4 17076838 Chr1 27156532 OsKitaake04g083350
Translocation Chr4 17080445 Chr1 27156522
Translocation Chr4 25855905 Chr2 32295917
Translocation Chr4 25855917 Chr2 32307918

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23621160	G-A	Hetero	INTERGENIC
SBS	Chr1	27342978	C-T	Hetero	INTERGENIC
SBS	Chr2	24296927	G-C	Homo	INTERGENIC
SBS	Chr3	8483627	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g116200
SBS	Chr3	29116684	C-A	Hetero	INTERGENIC
SBS	Chr3	30137032	C-T	Hetero	INTERGENIC
SBS	Chr4	8698333	A-G	Hetero	INTRON
SBS	Chr4	18177459	T-C	Hetero	INTERGENIC
SBS	Chr4	19447221	G-A	Hetero	INTERGENIC
SBS	Chr4	21005115	T-C	Hetero	INTERGENIC
SBS	Chr5	12554602	C-T	Homo	INTERGENIC
SBS	Chr5	13094917	T-C	Homo	INTERGENIC
SBS	Chr5	23595068	A-G	Hetero	INTERGENIC
SBS	Chr5	27475922	G-C	Hetero	INTERGENIC
SBS	Chr6	16022404	A-G	Hetero	INTERGENIC
SBS	Chr6	18885907	G-A	Hetero	INTERGENIC
SBS	Chr6	20819708	T-C	Hetero	INTERGENIC
SBS	Chr6	23002680	C-T	Hetero	INTERGENIC
SBS	Chr7	8062205	A-T	Hetero	INTERGENIC
SBS	Chr7	12895605	A-T	Homo	INTERGENIC
SBS	Chr7	20011206	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g163900
SBS	Chr7	24168862	T-A	Homo	INTERGENIC
SBS	Chr8	3352277	T-C	Hetero	INTERGENIC
SBS	Chr9	4576514	A-T	Hetero	INTERGENIC
SBS	Chr10	4468457	A-G	Hetero	INTERGENIC
SBS	Chr10	6038479	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g041600
SBS	Chr11	736599	C-T	Hetero	INTERGENIC
SBS	Chr11	20011179	G-A	Hetero	INTERGENIC
SBS	Chr12	10763082	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	205388	205395	7
Deletion	Chr2	3001239	3001242	3
Deletion	Chr2	3348299	3348319	20
Deletion	Chr12	3728509	3728513	4	OsKitaake12g051900
Deletion	Chr7	4594650	4594654	4
Deletion	Chr8	4658069	4658071	2
Deletion	Chr1	4887721	4887722	1
Deletion	Chr5	5923460	5923483	23
Deletion	Chr6	9129175	9129177	2
Deletion	Chr4	11040106	11040109	3
Deletion	Chr5	11176279	11176283	4
Deletion	Chr12	12329084	12329103	19
Deletion	Chr4	18212001	18345000	132999	5
Deletion	Chr4	21816307	21816308	1
Deletion	Chr5	22933055	22933070	15
Deletion	Chr5	23208001	23389000	180999	24
Deletion	Chr8	23797097	23797098	1
Deletion	Chr3	26545014	26545017	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15381383	15971896	OsKitaake02g165600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes