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Mutant Information

Mutant Name	FN2351 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2351 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 406195 C-A Hetero INTERGENIC
SBS Chr2 4480562 C-T Hetero INTERGENIC
SBS Chr2 8385024 C-T Hetero INTRON
SBS Chr2 9113080 A-T Hetero INTERGENIC
SBS Chr2 21853877 C-G Hetero INTERGENIC
SBS Chr2 22937475 A-T Hetero INTERGENIC
SBS Chr2 36634594 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g390000
SBS Chr2 36634595 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g390000
SBS Chr3 4210057 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g059700
SBS Chr3 6845903 G-A Hetero INTERGENIC
SBS Chr3 14063946 C-T Homo INTERGENIC
SBS Chr3 19472563 A-T Homo INTERGENIC
SBS Chr3 21793990 C-T Homo INTERGENIC
SBS Chr3 28060463 C-G Hetero INTRON
SBS Chr3 29293646 T-A Hetero INTERGENIC
SBS Chr3 30523631 C-T Hetero INTERGENIC
SBS Chr3 31737379 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g334600
SBS Chr3 31737380 C-A Hetero STOP_GAINED OsKitaake03g334600
SBS Chr3 34828195 C-T Homo INTERGENIC
SBS Chr4 2213808 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g014000
SBS Chr4 2553916 C-T Hetero INTERGENIC
SBS Chr4 2637461 C-T Hetero INTERGENIC
SBS Chr4 2661553 C-T Hetero INTERGENIC
SBS Chr4 4255028 A-T Hetero INTERGENIC
SBS Chr4 13478663 G-C Hetero INTERGENIC
SBS Chr4 20106157 T-C Hetero INTERGENIC
SBS Chr4 31459937 T-C Hetero INTRON
SBS Chr4 35025237 C-T Hetero INTERGENIC
SBS Chr5 4282612 C-A Hetero INTERGENIC
SBS Chr5 10088808 C-T Hetero INTERGENIC
SBS Chr5 13028032 G-A Homo INTERGENIC
SBS Chr5 19341195 T-C Hetero INTERGENIC
SBS Chr6 9379597 G-A Hetero INTERGENIC
SBS Chr6 14460917 G-T Hetero INTERGENIC
SBS Chr6 15938425 A-G Hetero INTERGENIC
SBS Chr6 21955749 A-G Hetero INTERGENIC
SBS Chr6 26946192 G-T Homo INTERGENIC
SBS Chr6 29273008 T-C Homo INTERGENIC
SBS Chr7 7133225 C-T Homo INTERGENIC
SBS Chr7 7133226 C-T Homo INTERGENIC
SBS Chr7 21417845 A-G Hetero INTRON
SBS Chr7 27028360 C-T Hetero INTERGENIC
SBS Chr8 12086219 A-C Homo INTERGENIC
SBS Chr8 13753630 A-T Hetero INTERGENIC
SBS Chr8 22400040 A-T Hetero INTERGENIC
SBS Chr9 3160310 G-A Hetero INTERGENIC
SBS Chr9 3160311 A-T Hetero INTERGENIC
SBS Chr9 13589890 A-T Hetero INTERGENIC
SBS Chr9 16445280 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g119501
SBS Chr10 18427186 C-T Hetero INTERGENIC
SBS Chr10 21085936 C-T Hetero INTERGENIC
SBS Chr11 4581856 G-A Hetero INTERGENIC
SBS Chr11 16076828 C-G Hetero INTERGENIC
SBS Chr12 3181843 C-T Homo NON_SYNONYMOUS_CODING OsKitaake12g045700
SBS Chr12 4452589 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1451336 1451338 2
Deletion Chr2 5919226 5919227 1 OsKitaake02g081600
Deletion Chr2 6399173 6399176 3
Deletion Chr7 6700057 6700070 13
Deletion Chr6 14458001 14847000 388999 15
Deletion Chr6 14861001 14924000 62999 5
Deletion Chr6 14928001 15235000 306999 10
Deletion Chr8 18482974 18482976 2
Deletion Chr1 41148124 41148126 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11881867 11881870 2
Insertion Chr4 30058269 30058273 3
Insertion Chr6 13448796 13448799 2
Insertion Chr10 14378527 14378530 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 14055590 14077135
Inversion Chr6 23355837 23362392
Inversion Chr6 23361186 23362399
Inversion Chr6 28720963 29127026 OsKitaake06g268800
Inversion Chr6 28720968 29142036 OsKitaake06g269000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 14077141 Chr2 6123301
Translocation Chr6 14077374 Chr2 6123290

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	406195	C-A	Hetero	INTERGENIC
SBS	Chr2	4480562	C-T	Hetero	INTERGENIC
SBS	Chr2	8385024	C-T	Hetero	INTRON
SBS	Chr2	9113080	A-T	Hetero	INTERGENIC
SBS	Chr2	21853877	C-G	Hetero	INTERGENIC
SBS	Chr2	22937475	A-T	Hetero	INTERGENIC
SBS	Chr2	36634594	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g390000
SBS	Chr2	36634595	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g390000
SBS	Chr3	4210057	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g059700
SBS	Chr3	6845903	G-A	Hetero	INTERGENIC
SBS	Chr3	14063946	C-T	Homo	INTERGENIC
SBS	Chr3	19472563	A-T	Homo	INTERGENIC
SBS	Chr3	21793990	C-T	Homo	INTERGENIC
SBS	Chr3	28060463	C-G	Hetero	INTRON
SBS	Chr3	29293646	T-A	Hetero	INTERGENIC
SBS	Chr3	30523631	C-T	Hetero	INTERGENIC
SBS	Chr3	31737379	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g334600
SBS	Chr3	31737380	C-A	Hetero	STOP_GAINED	OsKitaake03g334600
SBS	Chr3	34828195	C-T	Homo	INTERGENIC
SBS	Chr4	2213808	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g014000
SBS	Chr4	2553916	C-T	Hetero	INTERGENIC
SBS	Chr4	2637461	C-T	Hetero	INTERGENIC
SBS	Chr4	2661553	C-T	Hetero	INTERGENIC
SBS	Chr4	4255028	A-T	Hetero	INTERGENIC
SBS	Chr4	13478663	G-C	Hetero	INTERGENIC
SBS	Chr4	20106157	T-C	Hetero	INTERGENIC
SBS	Chr4	31459937	T-C	Hetero	INTRON
SBS	Chr4	35025237	C-T	Hetero	INTERGENIC
SBS	Chr5	4282612	C-A	Hetero	INTERGENIC
SBS	Chr5	10088808	C-T	Hetero	INTERGENIC
SBS	Chr5	13028032	G-A	Homo	INTERGENIC
SBS	Chr5	19341195	T-C	Hetero	INTERGENIC
SBS	Chr6	9379597	G-A	Hetero	INTERGENIC
SBS	Chr6	14460917	G-T	Hetero	INTERGENIC
SBS	Chr6	15938425	A-G	Hetero	INTERGENIC
SBS	Chr6	21955749	A-G	Hetero	INTERGENIC
SBS	Chr6	26946192	G-T	Homo	INTERGENIC
SBS	Chr6	29273008	T-C	Homo	INTERGENIC
SBS	Chr7	7133225	C-T	Homo	INTERGENIC
SBS	Chr7	7133226	C-T	Homo	INTERGENIC
SBS	Chr7	21417845	A-G	Hetero	INTRON
SBS	Chr7	27028360	C-T	Hetero	INTERGENIC
SBS	Chr8	12086219	A-C	Homo	INTERGENIC
SBS	Chr8	13753630	A-T	Hetero	INTERGENIC
SBS	Chr8	22400040	A-T	Hetero	INTERGENIC
SBS	Chr9	3160310	G-A	Hetero	INTERGENIC
SBS	Chr9	3160311	A-T	Hetero	INTERGENIC
SBS	Chr9	13589890	A-T	Hetero	INTERGENIC
SBS	Chr9	16445280	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g119501
SBS	Chr10	18427186	C-T	Hetero	INTERGENIC
SBS	Chr10	21085936	C-T	Hetero	INTERGENIC
SBS	Chr11	4581856	G-A	Hetero	INTERGENIC
SBS	Chr11	16076828	C-G	Hetero	INTERGENIC
SBS	Chr12	3181843	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g045700
SBS	Chr12	4452589	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1451336	1451338	2
Deletion	Chr2	5919226	5919227	1	OsKitaake02g081600
Deletion	Chr2	6399173	6399176	3
Deletion	Chr7	6700057	6700070	13
Deletion	Chr6	14458001	14847000	388999	15
Deletion	Chr6	14861001	14924000	62999	5
Deletion	Chr6	14928001	15235000	306999	10
Deletion	Chr8	18482974	18482976	2
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14055590	14077135
Inversion	Chr6	23355837	23362392
Inversion	Chr6	23361186	23362399
Inversion	Chr6	28720963	29127026	OsKitaake06g268800
Inversion	Chr6	28720968	29142036	OsKitaake06g269000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes