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Mutant Information

Mutant Name	FN2352 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2352 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15878256 G-A Homo INTERGENIC
SBS Chr1 22698904 G-A Homo INTERGENIC
SBS Chr2 14846695 G-A Hetero INTERGENIC
SBS Chr2 32776632 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g336100
SBS Chr3 4286814 G-T Hetero INTERGENIC
SBS Chr3 12894051 C-A Hetero INTERGENIC
SBS Chr3 16412191 A-G Hetero INTERGENIC
SBS Chr3 16742441 T-C Hetero INTERGENIC
SBS Chr3 19035334 G-A Hetero INTERGENIC
SBS Chr3 19056639 G-A Hetero INTERGENIC
SBS Chr3 24970054 T-A Hetero INTERGENIC
SBS Chr3 32379414 G-A Homo UTR_3_PRIME
SBS Chr4 3921943 T-C Homo SPLICE_SITE_DONOR OsKitaake04g018900
SBS Chr5 777280 C-G Homo NON_SYNONYMOUS_CODING OsKitaake05g009450
SBS Chr5 7690513 G-T Hetero INTERGENIC
SBS Chr5 11842369 T-C Hetero INTERGENIC
SBS Chr6 8646698 T-A Hetero INTERGENIC
SBS Chr6 8646699 G-A Hetero INTERGENIC
SBS Chr6 12246093 T-C Hetero INTRON
SBS Chr6 29264929 T-G Hetero INTERGENIC
SBS Chr7 10473586 A-T Homo INTERGENIC
SBS Chr7 28146895 G-A Hetero INTERGENIC
SBS Chr7 28146896 G-A Hetero INTERGENIC
SBS Chr8 17721212 A-C Homo INTERGENIC
SBS Chr9 4214239 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 16833621 A-C Hetero INTERGENIC
SBS Chr9 19430829 T-A Hetero INTERGENIC
SBS Chr10 19605839 A-T Homo INTERGENIC
SBS Chr11 20081196 C-A Hetero INTERGENIC
SBS Chr11 20081197 G-A Hetero INTERGENIC
SBS Chr11 24391503 G-A Hetero INTERGENIC
SBS Chr11 24391505 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1134001 1391000 256999 23
Deletion Chr11 1892001 2048000 155999 32
Deletion Chr7 4912215 4912217 2
Deletion Chr8 5171897 5171899 2
Deletion Chr1 10116955 10116956 1
Deletion Chr10 12197001 12207000 9999
Deletion Chr10 12276001 12318000 41999 6
Deletion Chr11 12459798 12459799 1
Deletion Chr12 13477762 13477763 1
Deletion Chr9 15823613 15823618 5
Deletion Chr3 21545582 21545585 3
Deletion Chr8 22402224 22402244 20
Deletion Chr3 23743306 23743308 2
Deletion Chr8 23999284 23999285 1
Deletion Chr3 36761023 36761035 12
Deletion Chr1 42776685 42776691 6 OsKitaake01g471400

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22525662 22525665 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 11993287 12342746 2
Inversion Chr10 11993296 12322638 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15878256	G-A	Homo	INTERGENIC
SBS	Chr1	22698904	G-A	Homo	INTERGENIC
SBS	Chr2	14846695	G-A	Hetero	INTERGENIC
SBS	Chr2	32776632	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g336100
SBS	Chr3	4286814	G-T	Hetero	INTERGENIC
SBS	Chr3	12894051	C-A	Hetero	INTERGENIC
SBS	Chr3	16412191	A-G	Hetero	INTERGENIC
SBS	Chr3	16742441	T-C	Hetero	INTERGENIC
SBS	Chr3	19035334	G-A	Hetero	INTERGENIC
SBS	Chr3	19056639	G-A	Hetero	INTERGENIC
SBS	Chr3	24970054	T-A	Hetero	INTERGENIC
SBS	Chr3	32379414	G-A	Homo	UTR_3_PRIME
SBS	Chr4	3921943	T-C	Homo	SPLICE_SITE_DONOR	OsKitaake04g018900
SBS	Chr5	777280	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g009450
SBS	Chr5	7690513	G-T	Hetero	INTERGENIC
SBS	Chr5	11842369	T-C	Hetero	INTERGENIC
SBS	Chr6	8646698	T-A	Hetero	INTERGENIC
SBS	Chr6	8646699	G-A	Hetero	INTERGENIC
SBS	Chr6	12246093	T-C	Hetero	INTRON
SBS	Chr6	29264929	T-G	Hetero	INTERGENIC
SBS	Chr7	10473586	A-T	Homo	INTERGENIC
SBS	Chr7	28146895	G-A	Hetero	INTERGENIC
SBS	Chr7	28146896	G-A	Hetero	INTERGENIC
SBS	Chr8	17721212	A-C	Homo	INTERGENIC
SBS	Chr9	4214239	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	16833621	A-C	Hetero	INTERGENIC
SBS	Chr9	19430829	T-A	Hetero	INTERGENIC
SBS	Chr10	19605839	A-T	Homo	INTERGENIC
SBS	Chr11	20081196	C-A	Hetero	INTERGENIC
SBS	Chr11	20081197	G-A	Hetero	INTERGENIC
SBS	Chr11	24391503	G-A	Hetero	INTERGENIC
SBS	Chr11	24391505	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1134001	1391000	256999	23
Deletion	Chr11	1892001	2048000	155999	32
Deletion	Chr7	4912215	4912217	2
Deletion	Chr8	5171897	5171899	2
Deletion	Chr1	10116955	10116956	1
Deletion	Chr10	12197001	12207000	9999
Deletion	Chr10	12276001	12318000	41999	6
Deletion	Chr11	12459798	12459799	1
Deletion	Chr12	13477762	13477763	1
Deletion	Chr9	15823613	15823618	5
Deletion	Chr3	21545582	21545585	3
Deletion	Chr8	22402224	22402244	20
Deletion	Chr3	23743306	23743308	2
Deletion	Chr8	23999284	23999285	1
Deletion	Chr3	36761023	36761035	12
Deletion	Chr1	42776685	42776691	6	OsKitaake01g471400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11993287	12342746	2
Inversion	Chr10	11993296	12322638	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes