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Mutant Information

Mutant Name	FN2353 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2353 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4075823 C-G Hetero INTERGENIC
SBS Chr1 8558314 A-G Hetero INTERGENIC
SBS Chr1 19379288 G-A Hetero INTERGENIC
SBS Chr1 21442365 C-T Hetero INTERGENIC
SBS Chr1 33415879 C-A Homo INTRON
SBS Chr1 34506142 C-T Homo SYNONYMOUS_CODING
SBS Chr2 4835120 G-C Homo INTERGENIC
SBS Chr2 14214242 T-A Hetero INTERGENIC
SBS Chr2 17448507 C-A Homo INTRON
SBS Chr3 23073013 T-C Homo INTERGENIC
SBS Chr3 23604947 T-A Hetero UTR_3_PRIME
SBS Chr3 36198554 T-C Hetero INTERGENIC
SBS Chr4 1684897 C-T Homo INTERGENIC
SBS Chr4 6124712 G-C Homo INTERGENIC
SBS Chr4 12407854 T-A Homo INTERGENIC
SBS Chr4 16730930 C-T Hetero INTRON
SBS Chr4 28264268 G-A Hetero INTERGENIC
SBS Chr4 36611356 G-C Homo NON_SYNONYMOUS_CODING OsKitaake04g318800
SBS Chr5 7844604 C-T Hetero INTERGENIC
SBS Chr5 10093804 T-A Homo INTERGENIC
SBS Chr5 17892997 A-G Hetero INTERGENIC
SBS Chr6 6696855 T-A Hetero INTERGENIC
SBS Chr6 15981457 C-T Hetero INTERGENIC
SBS Chr6 18168806 T-C Hetero INTERGENIC
SBS Chr6 20287294 T-G Hetero UTR_3_PRIME
SBS Chr7 15300603 T-C Hetero INTERGENIC
SBS Chr7 25398204 G-T Hetero INTRON
SBS Chr7 27585481 T-A Hetero INTRON
SBS Chr8 12141723 G-A Hetero INTERGENIC
SBS Chr8 19118916 A-T Homo INTRON
SBS Chr9 2290903 A-G Hetero INTRON
SBS Chr9 8167591 C-T Hetero INTERGENIC
SBS Chr9 9746175 A-G Hetero SYNONYMOUS_CODING
SBS Chr9 21834230 G-A Hetero INTERGENIC
SBS Chr10 2028422 C-A Hetero INTERGENIC
SBS Chr10 3959524 A-T Homo INTERGENIC
SBS Chr10 17771079 G-C Homo INTERGENIC
SBS Chr10 19073689 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g137100
SBS Chr10 22416928 C-T Hetero UTR_5_PRIME
SBS Chr12 5826876 A-G Hetero INTERGENIC
SBS Chr12 12931252 G-A Hetero INTERGENIC
SBS Chr12 13461697 C-T Hetero INTERGENIC
SBS Chr12 22750687 T-A Hetero INTERGENIC
SBS Chr12 25544843 G-A Homo INTRON

Deletions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5135594 5135596 2
Deletion Chr11 13839314 13839315 1
Deletion Chr8 24053904 24053908 4
Deletion Chr8 25660763 25660774 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 32967324 32967330 5
Insertion Chr8 27257524 27257527 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 36137572 36235626 OsKitaake02g383300
Inversion Chr2 36137574 36235626 OsKitaake02g383300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 16138408 Chr1 33989487 OsKitaake01g349100
Translocation Chr6 17353315 Chr1 33989498 OsKitaake01g349100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4075823	C-G	Hetero	INTERGENIC
SBS	Chr1	8558314	A-G	Hetero	INTERGENIC
SBS	Chr1	19379288	G-A	Hetero	INTERGENIC
SBS	Chr1	21442365	C-T	Hetero	INTERGENIC
SBS	Chr1	33415879	C-A	Homo	INTRON
SBS	Chr1	34506142	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	4835120	G-C	Homo	INTERGENIC
SBS	Chr2	14214242	T-A	Hetero	INTERGENIC
SBS	Chr2	17448507	C-A	Homo	INTRON
SBS	Chr3	23073013	T-C	Homo	INTERGENIC
SBS	Chr3	23604947	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	36198554	T-C	Hetero	INTERGENIC
SBS	Chr4	1684897	C-T	Homo	INTERGENIC
SBS	Chr4	6124712	G-C	Homo	INTERGENIC
SBS	Chr4	12407854	T-A	Homo	INTERGENIC
SBS	Chr4	16730930	C-T	Hetero	INTRON
SBS	Chr4	28264268	G-A	Hetero	INTERGENIC
SBS	Chr4	36611356	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g318800
SBS	Chr5	7844604	C-T	Hetero	INTERGENIC
SBS	Chr5	10093804	T-A	Homo	INTERGENIC
SBS	Chr5	17892997	A-G	Hetero	INTERGENIC
SBS	Chr6	6696855	T-A	Hetero	INTERGENIC
SBS	Chr6	15981457	C-T	Hetero	INTERGENIC
SBS	Chr6	18168806	T-C	Hetero	INTERGENIC
SBS	Chr6	20287294	T-G	Hetero	UTR_3_PRIME
SBS	Chr7	15300603	T-C	Hetero	INTERGENIC
SBS	Chr7	25398204	G-T	Hetero	INTRON
SBS	Chr7	27585481	T-A	Hetero	INTRON
SBS	Chr8	12141723	G-A	Hetero	INTERGENIC
SBS	Chr8	19118916	A-T	Homo	INTRON
SBS	Chr9	2290903	A-G	Hetero	INTRON
SBS	Chr9	8167591	C-T	Hetero	INTERGENIC
SBS	Chr9	9746175	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	21834230	G-A	Hetero	INTERGENIC
SBS	Chr10	2028422	C-A	Hetero	INTERGENIC
SBS	Chr10	3959524	A-T	Homo	INTERGENIC
SBS	Chr10	17771079	G-C	Homo	INTERGENIC
SBS	Chr10	19073689	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g137100
SBS	Chr10	22416928	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	5826876	A-G	Hetero	INTERGENIC
SBS	Chr12	12931252	G-A	Hetero	INTERGENIC
SBS	Chr12	13461697	C-T	Hetero	INTERGENIC
SBS	Chr12	22750687	T-A	Hetero	INTERGENIC
SBS	Chr12	25544843	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5135594	5135596	2
Deletion	Chr11	13839314	13839315	1
Deletion	Chr8	24053904	24053908	4
Deletion	Chr8	25660763	25660774	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	36137572	36235626	OsKitaake02g383300
Inversion	Chr2	36137574	36235626	OsKitaake02g383300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes