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Mutant Information

Mutant Name	FN2354 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2354 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13709592 C-T Hetero INTRON
SBS Chr1 14372334 T-A Homo INTERGENIC
SBS Chr1 25912040 A-C Hetero INTERGENIC
SBS Chr1 42410057 C-A Homo INTERGENIC
SBS Chr3 5598697 C-T Homo UTR_3_PRIME
SBS Chr3 9366272 G-C Hetero INTERGENIC
SBS Chr3 14433432 G-C Hetero INTERGENIC
SBS Chr3 20000116 T-C Hetero INTRON
SBS Chr3 23801966 A-G Hetero INTERGENIC
SBS Chr3 25643071 G-A Hetero INTERGENIC
SBS Chr3 36199147 T-C Hetero INTERGENIC
SBS Chr3 37078324 C-T Hetero INTRON
SBS Chr4 294185 T-C Homo INTERGENIC
SBS Chr4 9718458 A-T Hetero INTERGENIC
SBS Chr4 12467832 G-A Hetero INTERGENIC
SBS Chr4 26589358 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g190900
SBS Chr6 22683090 G-T Homo INTERGENIC
SBS Chr6 22683091 A-G Homo INTERGENIC
SBS Chr7 161576 G-C Hetero INTERGENIC
SBS Chr7 8593371 C-A Hetero INTRON
SBS Chr7 10324175 A-T Hetero INTERGENIC
SBS Chr7 11671829 C-A Hetero INTERGENIC
SBS Chr7 12935361 G-T Hetero INTERGENIC
SBS Chr8 1305209 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g016800
SBS Chr8 2092657 C-A Hetero INTERGENIC
SBS Chr8 2096568 G-C Hetero INTRON
SBS Chr8 16182568 A-G Hetero INTERGENIC
SBS Chr8 23896394 G-A Homo INTERGENIC
SBS Chr9 3860551 C-G Hetero INTRON
SBS Chr9 5582613 A-T Hetero INTERGENIC
SBS Chr9 5673438 T-G Hetero INTERGENIC
SBS Chr9 15270856 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 6232693 T-A Hetero INTERGENIC
SBS Chr10 6285533 G-A Hetero INTERGENIC
SBS Chr10 7528912 C-T Hetero INTERGENIC
SBS Chr10 15711035 G-A Homo INTERGENIC
SBS Chr11 1678379 T-A Homo INTRON
SBS Chr11 9793234 A-T Hetero INTRON
SBS Chr12 24015544 A-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3967744 3967751 7
Deletion Chr11 5901475 5901482 7
Deletion Chr4 6826001 6870000 43999 OsKitaake04g035000
Deletion Chr6 8022615 8022618 3
Deletion Chr6 18586430 18586432 2
Deletion Chr4 19893001 19929000 35999 OsKitaake04g104100
Deletion Chr10 21658088 21658091 3
Deletion Chr3 23598539 23598551 12
Deletion Chr5 29663687 29663688 1
Deletion Chr2 32410693 32410698 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16036785 16036788 2
Insertion Chr7 13120271 13120274 2
Insertion Chr7 27481468 27481472 3
Insertion Chr9 9745318 9745322 3
Insertion Chr11 26313829 26313833 3
Insertion Chr12 20734708 20734711 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6769842 6827562
Inversion Chr1 14366365 14834433
Inversion Chr1 14366382 14834631

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13709592	C-T	Hetero	INTRON
SBS	Chr1	14372334	T-A	Homo	INTERGENIC
SBS	Chr1	25912040	A-C	Hetero	INTERGENIC
SBS	Chr1	42410057	C-A	Homo	INTERGENIC
SBS	Chr3	5598697	C-T	Homo	UTR_3_PRIME
SBS	Chr3	9366272	G-C	Hetero	INTERGENIC
SBS	Chr3	14433432	G-C	Hetero	INTERGENIC
SBS	Chr3	20000116	T-C	Hetero	INTRON
SBS	Chr3	23801966	A-G	Hetero	INTERGENIC
SBS	Chr3	25643071	G-A	Hetero	INTERGENIC
SBS	Chr3	36199147	T-C	Hetero	INTERGENIC
SBS	Chr3	37078324	C-T	Hetero	INTRON
SBS	Chr4	294185	T-C	Homo	INTERGENIC
SBS	Chr4	9718458	A-T	Hetero	INTERGENIC
SBS	Chr4	12467832	G-A	Hetero	INTERGENIC
SBS	Chr4	26589358	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g190900
SBS	Chr6	22683090	G-T	Homo	INTERGENIC
SBS	Chr6	22683091	A-G	Homo	INTERGENIC
SBS	Chr7	161576	G-C	Hetero	INTERGENIC
SBS	Chr7	8593371	C-A	Hetero	INTRON
SBS	Chr7	10324175	A-T	Hetero	INTERGENIC
SBS	Chr7	11671829	C-A	Hetero	INTERGENIC
SBS	Chr7	12935361	G-T	Hetero	INTERGENIC
SBS	Chr8	1305209	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g016800
SBS	Chr8	2092657	C-A	Hetero	INTERGENIC
SBS	Chr8	2096568	G-C	Hetero	INTRON
SBS	Chr8	16182568	A-G	Hetero	INTERGENIC
SBS	Chr8	23896394	G-A	Homo	INTERGENIC
SBS	Chr9	3860551	C-G	Hetero	INTRON
SBS	Chr9	5582613	A-T	Hetero	INTERGENIC
SBS	Chr9	5673438	T-G	Hetero	INTERGENIC
SBS	Chr9	15270856	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6232693	T-A	Hetero	INTERGENIC
SBS	Chr10	6285533	G-A	Hetero	INTERGENIC
SBS	Chr10	7528912	C-T	Hetero	INTERGENIC
SBS	Chr10	15711035	G-A	Homo	INTERGENIC
SBS	Chr11	1678379	T-A	Homo	INTRON
SBS	Chr11	9793234	A-T	Hetero	INTRON
SBS	Chr12	24015544	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3967744	3967751	7
Deletion	Chr11	5901475	5901482	7
Deletion	Chr4	6826001	6870000	43999	OsKitaake04g035000
Deletion	Chr6	8022615	8022618	3
Deletion	Chr6	18586430	18586432	2
Deletion	Chr4	19893001	19929000	35999	OsKitaake04g104100
Deletion	Chr10	21658088	21658091	3
Deletion	Chr3	23598539	23598551	12
Deletion	Chr5	29663687	29663688	1
Deletion	Chr2	32410693	32410698	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6769842	6827562
Inversion	Chr1	14366365	14834433
Inversion	Chr1	14366382	14834631

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes