Search Kitaake

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN2355 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2355 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3050581 A-G Hetero INTERGENIC
SBS Chr1 6277832 T-G Hetero INTERGENIC
SBS Chr1 7191519 T-C Homo INTERGENIC
SBS Chr1 10916349 G-A Hetero INTERGENIC
SBS Chr1 24104064 A-G Hetero INTERGENIC
SBS Chr1 25088474 A-G Hetero INTERGENIC
SBS Chr2 35614855 C-T Homo INTERGENIC
SBS Chr3 1235308 T-A Hetero INTRON
SBS Chr3 17363604 A-T Homo INTERGENIC
SBS Chr3 23509852 G-T Homo INTERGENIC
SBS Chr3 24598005 C-A Hetero INTERGENIC
SBS Chr5 2367937 T-G Hetero UTR_3_PRIME
SBS Chr5 3027344 A-C Hetero INTRON
SBS Chr5 20201714 C-G Hetero INTERGENIC
SBS Chr6 22990105 A-T Hetero INTERGENIC
SBS Chr7 14419561 G-A Hetero INTERGENIC
SBS Chr7 14430878 G-T Hetero INTERGENIC
SBS Chr7 14430879 A-T Hetero INTERGENIC
SBS Chr7 14660128 A-T Hetero INTERGENIC
SBS Chr7 19115329 A-G Hetero INTERGENIC
SBS Chr8 2742883 G-T Homo INTERGENIC
SBS Chr8 17245409 A-T Homo INTERGENIC
SBS Chr8 20474297 C-T Homo INTERGENIC
SBS Chr8 24954927 A-C Hetero INTERGENIC
SBS Chr12 853697 C-T Hetero INTERGENIC
SBS Chr12 22269415 A-C Hetero UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 752831 752832 1
Deletion Chr11 9438149 9438153 4
Deletion Chr12 14586001 14819000 232999 9
Deletion Chr3 14708524 14708539 15
Deletion Chr12 16468377 16468399 22
Deletion Chr7 18048001 18077000 28999
Deletion Chr12 19141853 19141863 10
Deletion Chr2 20248978 20248979 1
Deletion Chr7 23715349 23715356 7
Deletion Chr11 24903218 24903231 13
Deletion Chr4 25943155 25943174 19
Deletion Chr1 32540338 32540340 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 20903397 20903400 2
Insertion Chr3 4426704 4426708 3
Insertion Chr5 14083752 14083755 2
Insertion Chr7 23863974 23863979 4

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4899852 4930839
Inversion Chr1 4899861 4930855
Inversion Chr7 17706980 17788082 OsKitaake07g144166
Inversion Chr7 17706987 17788085 OsKitaake07g144166
Inversion Chr6 24689361 25246829

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 18854511 Chr3 34103678 OsKitaake03g368500
Translocation Chr4 18854530 Chr3 34106511

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3050581	A-G	Hetero	INTERGENIC
SBS	Chr1	6277832	T-G	Hetero	INTERGENIC
SBS	Chr1	7191519	T-C	Homo	INTERGENIC
SBS	Chr1	10916349	G-A	Hetero	INTERGENIC
SBS	Chr1	24104064	A-G	Hetero	INTERGENIC
SBS	Chr1	25088474	A-G	Hetero	INTERGENIC
SBS	Chr2	35614855	C-T	Homo	INTERGENIC
SBS	Chr3	1235308	T-A	Hetero	INTRON
SBS	Chr3	17363604	A-T	Homo	INTERGENIC
SBS	Chr3	23509852	G-T	Homo	INTERGENIC
SBS	Chr3	24598005	C-A	Hetero	INTERGENIC
SBS	Chr5	2367937	T-G	Hetero	UTR_3_PRIME
SBS	Chr5	3027344	A-C	Hetero	INTRON
SBS	Chr5	20201714	C-G	Hetero	INTERGENIC
SBS	Chr6	22990105	A-T	Hetero	INTERGENIC
SBS	Chr7	14419561	G-A	Hetero	INTERGENIC
SBS	Chr7	14430878	G-T	Hetero	INTERGENIC
SBS	Chr7	14430879	A-T	Hetero	INTERGENIC
SBS	Chr7	14660128	A-T	Hetero	INTERGENIC
SBS	Chr7	19115329	A-G	Hetero	INTERGENIC
SBS	Chr8	2742883	G-T	Homo	INTERGENIC
SBS	Chr8	17245409	A-T	Homo	INTERGENIC
SBS	Chr8	20474297	C-T	Homo	INTERGENIC
SBS	Chr8	24954927	A-C	Hetero	INTERGENIC
SBS	Chr12	853697	C-T	Hetero	INTERGENIC
SBS	Chr12	22269415	A-C	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	752831	752832	1
Deletion	Chr11	9438149	9438153	4
Deletion	Chr12	14586001	14819000	232999	9
Deletion	Chr3	14708524	14708539	15
Deletion	Chr12	16468377	16468399	22
Deletion	Chr7	18048001	18077000	28999
Deletion	Chr12	19141853	19141863	10
Deletion	Chr2	20248978	20248979	1
Deletion	Chr7	23715349	23715356	7
Deletion	Chr11	24903218	24903231	13
Deletion	Chr4	25943155	25943174	19
Deletion	Chr1	32540338	32540340	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4899852	4930839
Inversion	Chr1	4899861	4930855
Inversion	Chr7	17706980	17788082	OsKitaake07g144166
Inversion	Chr7	17706987	17788085	OsKitaake07g144166
Inversion	Chr6	24689361	25246829

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes