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| Mutant Information |
|---|
| Mutant Name | FN2356 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2356 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 31371395 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 44032779 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g491100 |
| SBS | Chr2 | 7300632 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18186117 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 30957259 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 36867095 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 9099831 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 9099832 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9099833 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 25545795 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g176100 |
| SBS | Chr4 | 27211498 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35332990 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 6330132 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6330133 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15986218 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2669173 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5332926 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 7156061 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 10522512 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13748893 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 8664822 | G-A | Homo | INTRON | |
| SBS | Chr8 | 13015886 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 21173332 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1912327 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 5308940 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 14667089 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 19332141 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 6644050 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9774973 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14964743 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25229717 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 27887352 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5858968 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 12125742 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 76014 | 76021 | 7 | OsKitaake02g001150 |
| Deletion | Chr2 | 2993173 | 2993176 | 3 | |
| Deletion | Chr6 | 5784088 | 5784089 | 1 | |
| Deletion | Chr11 | 7562816 | 7562821 | 5 | |
| Deletion | Chr10 | 7910289 | 7910296 | 7 | |
| Deletion | Chr6 | 8224383 | 8224391 | 8 | |
| Deletion | Chr4 | 9113291 | 9113298 | 7 | |
| Deletion | Chr1 | 19791694 | 19791696 | 2 | |
| Deletion | Chr1 | 21109991 | 21110001 | 10 | |
| Deletion | Chr11 | 24442642 | 24442643 | 1 | |
| Deletion | Chr12 | 25452191 | 25452193 | 2 | |
| Deletion | Chr3 | 29175713 | 29175726 | 13 | |
| Deletion | Chr11 | 29300448 | 29300449 | 1 | |
| Deletion | Chr4 | 32571799 | 32571811 | 12 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 5441273 | 5441276 | 2 | |
| Insertion | Chr4 | 35499182 | 35499185 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 373044 | 528471 | OsKitaake03g005300 |
| Inversion | Chr3 | 373062 | 547233 | OsKitaake03g005300 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 502413 | Chr8 | 9747475 | |
| Translocation | Chr8 | 8369376 | Chr5 | 29776196 | OsKitaake05g284700 |
| Translocation | Chr8 | 8369417 | Chr5 | 29776282 | OsKitaake05g284700 |
| Translocation | Chr11 | 20803981 | Chr8 | 4528227 | OsKitaake08g051100 |