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Mutant Information

Mutant Name	FN2357 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2357 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1802196 T-C Hetero UTR_5_PRIME
SBS Chr1 22986051 G-A Hetero INTERGENIC
SBS Chr1 23081934 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g219700
SBS Chr1 31860942 T-A Hetero INTERGENIC
SBS Chr1 34021807 A-C Hetero UTR_3_PRIME
SBS Chr1 34021808 C-A Hetero UTR_3_PRIME
SBS Chr2 15195101 T-A Homo INTERGENIC
SBS Chr2 17975958 A-T Homo INTRON
SBS Chr2 27249172 T-A Homo INTERGENIC
SBS Chr2 30740449 T-C Hetero INTERGENIC
SBS Chr2 30740450 A-C Hetero INTERGENIC
SBS Chr2 36069073 A-T Hetero INTERGENIC
SBS Chr3 2119812 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g030500
SBS Chr3 9084487 T-A Hetero INTERGENIC
SBS Chr3 18598149 T-C Hetero INTERGENIC
SBS Chr4 2191264 G-A Hetero INTERGENIC
SBS Chr4 4355936 G-C Hetero INTERGENIC
SBS Chr4 7509552 C-T Hetero INTERGENIC
SBS Chr4 14598707 T-C Hetero INTERGENIC
SBS Chr4 17758450 C-T Homo INTERGENIC
SBS Chr4 19011687 A-G Hetero INTERGENIC
SBS Chr4 34385879 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g285700
SBS Chr5 15422544 G-C Hetero INTERGENIC
SBS Chr7 25528975 G-A Homo NON_SYNONYMOUS_CODING OsKitaake07g231600
SBS Chr7 27065263 G-T Homo INTERGENIC
SBS Chr8 19251256 C-A Hetero INTERGENIC
SBS Chr8 19345946 C-T Hetero INTERGENIC
SBS Chr11 18077825 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g141300
SBS Chr12 13089263 G-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2060457 2060463 6
Deletion Chr1 4676604 4676616 12
Deletion Chr5 4921062 4921064 2
Deletion Chr10 9190890 9190893 3
Deletion Chr2 9812025 9812038 13
Deletion Chr10 13486001 13499000 12999 3
Deletion Chr6 13490152 13490176 24
Deletion Chr10 13504001 13536000 31999 5
Deletion Chr12 14997258 14997266 8
Deletion Chr5 16731986 16731996 10 OsKitaake05g128200
Deletion Chr5 16804223 16804235 12
Deletion Chr3 17530595 17530602 7
Deletion Chr9 18380297 18380298 1
Deletion Chr8 19784798 19784800 2
Deletion Chr1 20988727 20988728 1
Deletion Chr10 21142371 21142372 1
Deletion Chr1 22528996 22528999 3
Deletion Chr4 35309990 35309992 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29409679 29409682 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4193526 5001398 OsKitaake10g032000
Inversion Chr10 4193544 5001398 OsKitaake10g032000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1802196	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	22986051	G-A	Hetero	INTERGENIC
SBS	Chr1	23081934	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g219700
SBS	Chr1	31860942	T-A	Hetero	INTERGENIC
SBS	Chr1	34021807	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	34021808	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	15195101	T-A	Homo	INTERGENIC
SBS	Chr2	17975958	A-T	Homo	INTRON
SBS	Chr2	27249172	T-A	Homo	INTERGENIC
SBS	Chr2	30740449	T-C	Hetero	INTERGENIC
SBS	Chr2	30740450	A-C	Hetero	INTERGENIC
SBS	Chr2	36069073	A-T	Hetero	INTERGENIC
SBS	Chr3	2119812	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g030500
SBS	Chr3	9084487	T-A	Hetero	INTERGENIC
SBS	Chr3	18598149	T-C	Hetero	INTERGENIC
SBS	Chr4	2191264	G-A	Hetero	INTERGENIC
SBS	Chr4	4355936	G-C	Hetero	INTERGENIC
SBS	Chr4	7509552	C-T	Hetero	INTERGENIC
SBS	Chr4	14598707	T-C	Hetero	INTERGENIC
SBS	Chr4	17758450	C-T	Homo	INTERGENIC
SBS	Chr4	19011687	A-G	Hetero	INTERGENIC
SBS	Chr4	34385879	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g285700
SBS	Chr5	15422544	G-C	Hetero	INTERGENIC
SBS	Chr7	25528975	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g231600
SBS	Chr7	27065263	G-T	Homo	INTERGENIC
SBS	Chr8	19251256	C-A	Hetero	INTERGENIC
SBS	Chr8	19345946	C-T	Hetero	INTERGENIC
SBS	Chr11	18077825	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g141300
SBS	Chr12	13089263	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2060457	2060463	6
Deletion	Chr1	4676604	4676616	12
Deletion	Chr5	4921062	4921064	2
Deletion	Chr10	9190890	9190893	3
Deletion	Chr2	9812025	9812038	13
Deletion	Chr10	13486001	13499000	12999	3
Deletion	Chr6	13490152	13490176	24
Deletion	Chr10	13504001	13536000	31999	5
Deletion	Chr12	14997258	14997266	8
Deletion	Chr5	16731986	16731996	10	OsKitaake05g128200
Deletion	Chr5	16804223	16804235	12
Deletion	Chr3	17530595	17530602	7
Deletion	Chr9	18380297	18380298	1
Deletion	Chr8	19784798	19784800	2
Deletion	Chr1	20988727	20988728	1
Deletion	Chr10	21142371	21142372	1
Deletion	Chr1	22528996	22528999	3
Deletion	Chr4	35309990	35309992	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4193526	5001398	OsKitaake10g032000
Inversion	Chr10	4193544	5001398	OsKitaake10g032000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes