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Mutant Information

Mutant Name	FN2358 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2358 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3658085 T-C Hetero INTRON
SBS Chr1 23784255 T-C Homo INTERGENIC
SBS Chr1 30761912 C-G Homo INTERGENIC
SBS Chr2 2737547 A-G Homo INTERGENIC
SBS Chr2 19165504 G-A Hetero UTR_3_PRIME
SBS Chr2 22952793 T-A Hetero INTERGENIC
SBS Chr2 25232974 C-A Hetero INTERGENIC
SBS Chr2 28708157 G-A Hetero INTERGENIC
SBS Chr2 30376162 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 35307974 G-A Hetero INTERGENIC
SBS Chr3 7214838 G-A Homo INTERGENIC
SBS Chr3 18518766 G-A Homo INTERGENIC
SBS Chr3 24571474 C-T Homo INTERGENIC
SBS Chr3 25539518 T-A Hetero INTERGENIC
SBS Chr3 26632764 C-T Hetero INTERGENIC
SBS Chr3 30560328 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g320900
SBS Chr4 6777113 C-T Hetero INTERGENIC
SBS Chr4 11962740 C-G Hetero INTERGENIC
SBS Chr4 18935893 C-T Hetero INTRON
SBS Chr4 28848403 C-T Hetero INTERGENIC
SBS Chr4 35707799 A-T Hetero INTRON
SBS Chr4 35959609 A-G Hetero INTERGENIC
SBS Chr5 6743480 G-A Hetero INTERGENIC
SBS Chr5 16966877 G-T Hetero INTERGENIC
SBS Chr6 8076915 C-T Hetero INTERGENIC
SBS Chr6 8741188 C-T Hetero INTERGENIC
SBS Chr6 22899433 T-G Homo INTERGENIC
SBS Chr6 31036437 C-T Homo INTERGENIC
SBS Chr7 5684985 A-G Hetero INTERGENIC
SBS Chr7 17908133 A-G Hetero INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr7 24213075 T-C Hetero INTERGENIC
SBS Chr8 5979362 A-T Hetero INTERGENIC
SBS Chr8 8641735 T-G Homo INTRON
SBS Chr8 13467538 G-A Hetero INTERGENIC
SBS Chr8 14130022 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g111200
SBS Chr9 2692686 G-T Homo INTERGENIC
SBS Chr9 2975668 C-T Homo INTERGENIC
SBS Chr9 10639099 G-A Hetero INTERGENIC
SBS Chr10 10203020 G-C Homo INTERGENIC
SBS Chr10 15474581 T-C Hetero INTRON
SBS Chr10 20498466 A-G Hetero INTERGENIC
SBS Chr11 10938872 A-G Hetero INTERGENIC
SBS Chr11 21234563 G-T Hetero INTERGENIC
SBS Chr12 13746506 C-G Homo INTERGENIC
SBS Chr12 19167502 G-T Homo INTERGENIC

Deletions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 733288 733290 2
Deletion Chr10 12451424 12451426 2
Deletion Chr6 13543372 13543374 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16736088 16736091 2
Insertion Chr8 8947758 8947761 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3658085	T-C	Hetero	INTRON
SBS	Chr1	23784255	T-C	Homo	INTERGENIC
SBS	Chr1	30761912	C-G	Homo	INTERGENIC
SBS	Chr2	2737547	A-G	Homo	INTERGENIC
SBS	Chr2	19165504	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	22952793	T-A	Hetero	INTERGENIC
SBS	Chr2	25232974	C-A	Hetero	INTERGENIC
SBS	Chr2	28708157	G-A	Hetero	INTERGENIC
SBS	Chr2	30376162	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	35307974	G-A	Hetero	INTERGENIC
SBS	Chr3	7214838	G-A	Homo	INTERGENIC
SBS	Chr3	18518766	G-A	Homo	INTERGENIC
SBS	Chr3	24571474	C-T	Homo	INTERGENIC
SBS	Chr3	25539518	T-A	Hetero	INTERGENIC
SBS	Chr3	26632764	C-T	Hetero	INTERGENIC
SBS	Chr3	30560328	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g320900
SBS	Chr4	6777113	C-T	Hetero	INTERGENIC
SBS	Chr4	11962740	C-G	Hetero	INTERGENIC
SBS	Chr4	18935893	C-T	Hetero	INTRON
SBS	Chr4	28848403	C-T	Hetero	INTERGENIC
SBS	Chr4	35707799	A-T	Hetero	INTRON
SBS	Chr4	35959609	A-G	Hetero	INTERGENIC
SBS	Chr5	6743480	G-A	Hetero	INTERGENIC
SBS	Chr5	16966877	G-T	Hetero	INTERGENIC
SBS	Chr6	8076915	C-T	Hetero	INTERGENIC
SBS	Chr6	8741188	C-T	Hetero	INTERGENIC
SBS	Chr6	22899433	T-G	Homo	INTERGENIC
SBS	Chr6	31036437	C-T	Homo	INTERGENIC
SBS	Chr7	5684985	A-G	Hetero	INTERGENIC
SBS	Chr7	17908133	A-G	Hetero	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr7	24213075	T-C	Hetero	INTERGENIC
SBS	Chr8	5979362	A-T	Hetero	INTERGENIC
SBS	Chr8	8641735	T-G	Homo	INTRON
SBS	Chr8	13467538	G-A	Hetero	INTERGENIC
SBS	Chr8	14130022	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g111200
SBS	Chr9	2692686	G-T	Homo	INTERGENIC
SBS	Chr9	2975668	C-T	Homo	INTERGENIC
SBS	Chr9	10639099	G-A	Hetero	INTERGENIC
SBS	Chr10	10203020	G-C	Homo	INTERGENIC
SBS	Chr10	15474581	T-C	Hetero	INTRON
SBS	Chr10	20498466	A-G	Hetero	INTERGENIC
SBS	Chr11	10938872	A-G	Hetero	INTERGENIC
SBS	Chr11	21234563	G-T	Hetero	INTERGENIC
SBS	Chr12	13746506	C-G	Homo	INTERGENIC
SBS	Chr12	19167502	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	733288	733290	2
Deletion	Chr10	12451424	12451426	2
Deletion	Chr6	13543372	13543374	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes