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Mutant Information

Mutant Name	FN2359 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2359 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12472294 G-A Homo INTERGENIC
SBS Chr2 1983688 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 3989913 G-C Hetero INTERGENIC
SBS Chr4 18729683 T-G Hetero INTRON
SBS Chr4 20774578 G-T Hetero INTERGENIC
SBS Chr4 31581461 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g248800
SBS Chr4 35071167 C-T Hetero UTR_3_PRIME
SBS Chr5 6081535 A-G Hetero INTERGENIC
SBS Chr5 11224803 G-A Homo INTERGENIC
SBS Chr6 12499136 G-A Hetero INTERGENIC
SBS Chr6 12499137 G-A Hetero INTERGENIC
SBS Chr6 24879841 T-C Hetero INTERGENIC
SBS Chr7 2347621 G-T Hetero INTERGENIC
SBS Chr7 2347623 C-T Hetero INTERGENIC
SBS Chr8 414113 T-C Homo INTERGENIC
SBS Chr8 9704467 T-C Homo INTERGENIC
SBS Chr9 3586659 A-G Hetero INTERGENIC
SBS Chr9 8799018 C-G Hetero INTERGENIC
SBS Chr11 9436913 C-T Homo INTERGENIC
SBS Chr11 15407043 C-T Hetero INTERGENIC
SBS Chr11 22079326 C-T Hetero INTERGENIC
SBS Chr12 5555785 T-C Homo INTERGENIC
SBS Chr12 6225836 G-A Homo INTERGENIC
SBS Chr12 19307807 G-A Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 7464620 7464625 5
Deletion Chr12 18793998 18794002 4
Deletion Chr1 24800804 24800820 16 OsKitaake01g239500
Deletion Chr1 40463284 40463295 11
Deletion Chr1 42266353 42266358 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29077620 29077624 3
Insertion Chr5 6205447 6205452 4
Insertion Chr7 21976534 21976537 2
Insertion Chr9 10232055 10232058 2
Insertion Chr12 12778408 12778411 2
Insertion Chr5 6982774 6982776 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 25738392 25868462

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 6982575 Chr3 576469
Translocation Chr6 10728538 Chr3 470373

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12472294	G-A	Homo	INTERGENIC
SBS	Chr2	1983688	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	3989913	G-C	Hetero	INTERGENIC
SBS	Chr4	18729683	T-G	Hetero	INTRON
SBS	Chr4	20774578	G-T	Hetero	INTERGENIC
SBS	Chr4	31581461	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g248800
SBS	Chr4	35071167	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	6081535	A-G	Hetero	INTERGENIC
SBS	Chr5	11224803	G-A	Homo	INTERGENIC
SBS	Chr6	12499136	G-A	Hetero	INTERGENIC
SBS	Chr6	12499137	G-A	Hetero	INTERGENIC
SBS	Chr6	24879841	T-C	Hetero	INTERGENIC
SBS	Chr7	2347621	G-T	Hetero	INTERGENIC
SBS	Chr7	2347623	C-T	Hetero	INTERGENIC
SBS	Chr8	414113	T-C	Homo	INTERGENIC
SBS	Chr8	9704467	T-C	Homo	INTERGENIC
SBS	Chr9	3586659	A-G	Hetero	INTERGENIC
SBS	Chr9	8799018	C-G	Hetero	INTERGENIC
SBS	Chr11	9436913	C-T	Homo	INTERGENIC
SBS	Chr11	15407043	C-T	Hetero	INTERGENIC
SBS	Chr11	22079326	C-T	Hetero	INTERGENIC
SBS	Chr12	5555785	T-C	Homo	INTERGENIC
SBS	Chr12	6225836	G-A	Homo	INTERGENIC
SBS	Chr12	19307807	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	7464620	7464625	5
Deletion	Chr12	18793998	18794002	4
Deletion	Chr1	24800804	24800820	16	OsKitaake01g239500
Deletion	Chr1	40463284	40463295	11
Deletion	Chr1	42266353	42266358	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25738392	25868462

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes