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Mutant Information

Mutant Name	FN2360 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2360 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10099340 A-T Homo INTRON
SBS Chr1 12028299 G-T Hetero INTERGENIC
SBS Chr1 18091345 C-T Hetero INTERGENIC
SBS Chr1 21930135 A-G Hetero UTR_3_PRIME
SBS Chr1 29251071 G-T Homo SYNONYMOUS_CODING
SBS Chr1 32402729 A-G Hetero INTRON
SBS Chr2 230312 C-T Hetero INTERGENIC
SBS Chr2 7877584 G-A Hetero INTERGENIC
SBS Chr2 27897564 A-G Hetero INTRON
SBS Chr3 1040066 C-A Hetero INTERGENIC
SBS Chr3 9258285 C-T Homo INTERGENIC
SBS Chr3 18690874 G-A Hetero INTRON
SBS Chr3 20404127 G-A Hetero INTERGENIC
SBS Chr3 32464050 C-A Hetero UTR_3_PRIME
SBS Chr3 37114802 C-T Hetero UTR_3_PRIME
SBS Chr4 24610458 G-A Homo INTERGENIC
SBS Chr5 3080350 T-A Homo INTERGENIC
SBS Chr5 5332197 C-G Homo INTERGENIC
SBS Chr6 1980086 C-G Homo INTRON
SBS Chr6 2563481 T-A Homo INTERGENIC
SBS Chr6 15700491 C-G Hetero INTERGENIC
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr7 9622753 C-T Hetero INTERGENIC
SBS Chr7 10541618 G-T Hetero INTERGENIC
SBS Chr7 10541619 G-A Hetero INTERGENIC
SBS Chr7 15693723 G-A Hetero INTERGENIC
SBS Chr7 22612321 G-A Hetero INTERGENIC
SBS Chr7 24084135 G-T Hetero INTERGENIC
SBS Chr7 29539157 G-A Hetero INTERGENIC
SBS Chr8 7738229 T-C Hetero INTERGENIC
SBS Chr8 17531266 G-T Hetero INTERGENIC
SBS Chr8 22254992 C-A Homo INTERGENIC
SBS Chr9 5501800 T-A Homo INTERGENIC
SBS Chr9 22411158 G-A Homo INTERGENIC
SBS Chr10 1963501 G-A Hetero INTERGENIC
SBS Chr10 6816291 C-T Hetero INTERGENIC
SBS Chr10 21289771 G-A Hetero INTERGENIC
SBS Chr11 9103338 G-A Hetero INTERGENIC
SBS Chr11 13335910 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4870889 4870891 2
Deletion Chr1 5226212 5226213 1
Deletion Chr5 6255963 6255970 7
Deletion Chr2 11844661 11844668 7
Deletion Chr2 15103664 15103667 3
Deletion Chr9 17379605 17379607 2
Deletion Chr11 22021665 22021668 3
Deletion Chr3 22065138 22065140 2
Deletion Chr11 24186599 24186605 6 OsKitaake11g194800
Deletion Chr11 26736392 26736397 5 OsKitaake11g217800
Deletion Chr4 28957766 28957767 1
Deletion Chr1 29489658 29489659 1
Deletion Chr5 29757091 29757106 15

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 25883556 25883559 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 11171772 11587725
Inversion Chr10 11171788 11587734 OsKitaake10g069100
Inversion Chr10 12556806 13314023 OsKitaake10g076300
Inversion Chr10 13316051 13644041 OsKitaake10g082500
Inversion Chr7 23800116 23917429 OsKitaake07g209400
Inversion Chr7 23885132 23917429 OsKitaake07g210600
Inversion Chr1 30854456 30951213
Inversion Chr1 30854562 30951216

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10099340	A-T	Homo	INTRON
SBS	Chr1	12028299	G-T	Hetero	INTERGENIC
SBS	Chr1	18091345	C-T	Hetero	INTERGENIC
SBS	Chr1	21930135	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	29251071	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	32402729	A-G	Hetero	INTRON
SBS	Chr2	230312	C-T	Hetero	INTERGENIC
SBS	Chr2	7877584	G-A	Hetero	INTERGENIC
SBS	Chr2	27897564	A-G	Hetero	INTRON
SBS	Chr3	1040066	C-A	Hetero	INTERGENIC
SBS	Chr3	9258285	C-T	Homo	INTERGENIC
SBS	Chr3	18690874	G-A	Hetero	INTRON
SBS	Chr3	20404127	G-A	Hetero	INTERGENIC
SBS	Chr3	32464050	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	37114802	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	24610458	G-A	Homo	INTERGENIC
SBS	Chr5	3080350	T-A	Homo	INTERGENIC
SBS	Chr5	5332197	C-G	Homo	INTERGENIC
SBS	Chr6	1980086	C-G	Homo	INTRON
SBS	Chr6	2563481	T-A	Homo	INTERGENIC
SBS	Chr6	15700491	C-G	Hetero	INTERGENIC
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	9622753	C-T	Hetero	INTERGENIC
SBS	Chr7	10541618	G-T	Hetero	INTERGENIC
SBS	Chr7	10541619	G-A	Hetero	INTERGENIC
SBS	Chr7	15693723	G-A	Hetero	INTERGENIC
SBS	Chr7	22612321	G-A	Hetero	INTERGENIC
SBS	Chr7	24084135	G-T	Hetero	INTERGENIC
SBS	Chr7	29539157	G-A	Hetero	INTERGENIC
SBS	Chr8	7738229	T-C	Hetero	INTERGENIC
SBS	Chr8	17531266	G-T	Hetero	INTERGENIC
SBS	Chr8	22254992	C-A	Homo	INTERGENIC
SBS	Chr9	5501800	T-A	Homo	INTERGENIC
SBS	Chr9	22411158	G-A	Homo	INTERGENIC
SBS	Chr10	1963501	G-A	Hetero	INTERGENIC
SBS	Chr10	6816291	C-T	Hetero	INTERGENIC
SBS	Chr10	21289771	G-A	Hetero	INTERGENIC
SBS	Chr11	9103338	G-A	Hetero	INTERGENIC
SBS	Chr11	13335910	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4870889	4870891	2
Deletion	Chr1	5226212	5226213	1
Deletion	Chr5	6255963	6255970	7
Deletion	Chr2	11844661	11844668	7
Deletion	Chr2	15103664	15103667	3
Deletion	Chr9	17379605	17379607	2
Deletion	Chr11	22021665	22021668	3
Deletion	Chr3	22065138	22065140	2
Deletion	Chr11	24186599	24186605	6	OsKitaake11g194800
Deletion	Chr11	26736392	26736397	5	OsKitaake11g217800
Deletion	Chr4	28957766	28957767	1
Deletion	Chr1	29489658	29489659	1
Deletion	Chr5	29757091	29757106	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11171772	11587725
Inversion	Chr10	11171788	11587734	OsKitaake10g069100
Inversion	Chr10	12556806	13314023	OsKitaake10g076300
Inversion	Chr10	13316051	13644041	OsKitaake10g082500
Inversion	Chr7	23800116	23917429	OsKitaake07g209400
Inversion	Chr7	23885132	23917429	OsKitaake07g210600
Inversion	Chr1	30854456	30951213
Inversion	Chr1	30854562	30951216

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes