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Mutant Information

Mutant Name	FN2361 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2361 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22712053 C-T Hetero INTRON
SBS Chr1 31263758 C-T Homo SYNONYMOUS_CODING
SBS Chr2 6385380 C-T Hetero INTERGENIC
SBS Chr2 30516379 A-G Homo INTERGENIC
SBS Chr3 1400948 A-T Homo INTERGENIC
SBS Chr3 2174358 A-T Hetero INTERGENIC
SBS Chr3 5807611 G-A Hetero INTERGENIC
SBS Chr3 21715118 C-T Homo INTERGENIC
SBS Chr3 22862811 C-A Homo INTRON
SBS Chr3 25339506 C-G Homo INTERGENIC
SBS Chr3 25339512 C-T Homo INTERGENIC
SBS Chr4 11916322 T-C Hetero INTERGENIC
SBS Chr4 17146801 G-A Hetero INTRON
SBS Chr4 17599536 C-T Hetero INTERGENIC
SBS Chr5 5907759 C-T Hetero INTERGENIC
SBS Chr5 6126485 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g063700
SBS Chr5 24179759 G-A Homo INTRON
SBS Chr5 24179760 T-A Homo INTRON
SBS Chr5 24179761 C-A Homo INTRON
SBS Chr6 1299645 G-C Hetero INTERGENIC
SBS Chr6 22944565 A-T Homo INTERGENIC
SBS Chr6 29388311 A-T Hetero INTERGENIC
SBS Chr7 13163838 C-G Hetero INTERGENIC
SBS Chr7 15826499 A-G Hetero INTRON
SBS Chr7 16190435 C-T Hetero INTERGENIC
SBS Chr7 18620978 G-A Hetero INTERGENIC
SBS Chr7 24238763 C-T Hetero INTERGENIC
SBS Chr8 13540103 G-A Hetero INTERGENIC
SBS Chr8 15620500 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 15620501 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g120800
SBS Chr9 12780732 T-C Hetero INTERGENIC
SBS Chr10 758908 T-A Hetero INTERGENIC
SBS Chr10 10930949 A-G Hetero INTERGENIC
SBS Chr11 9380223 A-T Homo UTR_3_PRIME
SBS Chr11 11680804 T-C Homo INTERGENIC
SBS Chr12 2747133 T-C Hetero INTERGENIC
SBS Chr12 8081515 T-C Hetero UTR_5_PRIME
SBS Chr12 8384067 T-C Hetero INTERGENIC
SBS Chr12 12963197 G-A Hetero INTERGENIC
SBS Chr12 12963200 G-A Hetero INTERGENIC
SBS Chr12 12963201 C-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1385001 1400000 14999 2
Deletion Chr3 2220044 2220050 6
Deletion Chr1 3226108 3226200 92
Deletion Chr10 5459001 5553000 93999 3
Deletion Chr3 5653001 5689000 35999 6
Deletion Chr7 7422331 7422333 2
Deletion Chr11 8178001 8182000 3999 OsKitaake11g089900
Deletion Chr7 8301454 8301456 2
Deletion Chr9 12728768 12728780 12
Deletion Chr6 15008824 15008828 4
Deletion Chr12 15839475 15839478 3
Deletion Chr7 19197333 19197345 12
Deletion Chr12 20188501 20188510 9
Deletion Chr11 26696397 26696408 11
Deletion Chr7 27259175 27259176 1
Deletion Chr11 27673961 27673963 2
Deletion Chr11 29494129 29494135 6 OsKitaake11g242700
Deletion Chr3 30943952 30943955 3
Deletion Chr1 31659065 31659076 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 21869314 21869317 2
Insertion Chr12 8415275 8415278 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 22239132 22305108

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 11049879 Chr5 23599356
Translocation Chr6 30976714 Chr5 23599207 OsKitaake06g293800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22712053	C-T	Hetero	INTRON
SBS	Chr1	31263758	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	6385380	C-T	Hetero	INTERGENIC
SBS	Chr2	30516379	A-G	Homo	INTERGENIC
SBS	Chr3	1400948	A-T	Homo	INTERGENIC
SBS	Chr3	2174358	A-T	Hetero	INTERGENIC
SBS	Chr3	5807611	G-A	Hetero	INTERGENIC
SBS	Chr3	21715118	C-T	Homo	INTERGENIC
SBS	Chr3	22862811	C-A	Homo	INTRON
SBS	Chr3	25339506	C-G	Homo	INTERGENIC
SBS	Chr3	25339512	C-T	Homo	INTERGENIC
SBS	Chr4	11916322	T-C	Hetero	INTERGENIC
SBS	Chr4	17146801	G-A	Hetero	INTRON
SBS	Chr4	17599536	C-T	Hetero	INTERGENIC
SBS	Chr5	5907759	C-T	Hetero	INTERGENIC
SBS	Chr5	6126485	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g063700
SBS	Chr5	24179759	G-A	Homo	INTRON
SBS	Chr5	24179760	T-A	Homo	INTRON
SBS	Chr5	24179761	C-A	Homo	INTRON
SBS	Chr6	1299645	G-C	Hetero	INTERGENIC
SBS	Chr6	22944565	A-T	Homo	INTERGENIC
SBS	Chr6	29388311	A-T	Hetero	INTERGENIC
SBS	Chr7	13163838	C-G	Hetero	INTERGENIC
SBS	Chr7	15826499	A-G	Hetero	INTRON
SBS	Chr7	16190435	C-T	Hetero	INTERGENIC
SBS	Chr7	18620978	G-A	Hetero	INTERGENIC
SBS	Chr7	24238763	C-T	Hetero	INTERGENIC
SBS	Chr8	13540103	G-A	Hetero	INTERGENIC
SBS	Chr8	15620500	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	15620501	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g120800
SBS	Chr9	12780732	T-C	Hetero	INTERGENIC
SBS	Chr10	758908	T-A	Hetero	INTERGENIC
SBS	Chr10	10930949	A-G	Hetero	INTERGENIC
SBS	Chr11	9380223	A-T	Homo	UTR_3_PRIME
SBS	Chr11	11680804	T-C	Homo	INTERGENIC
SBS	Chr12	2747133	T-C	Hetero	INTERGENIC
SBS	Chr12	8081515	T-C	Hetero	UTR_5_PRIME
SBS	Chr12	8384067	T-C	Hetero	INTERGENIC
SBS	Chr12	12963197	G-A	Hetero	INTERGENIC
SBS	Chr12	12963200	G-A	Hetero	INTERGENIC
SBS	Chr12	12963201	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1385001	1400000	14999	2
Deletion	Chr3	2220044	2220050	6
Deletion	Chr1	3226108	3226200	92
Deletion	Chr10	5459001	5553000	93999	3
Deletion	Chr3	5653001	5689000	35999	6
Deletion	Chr7	7422331	7422333	2
Deletion	Chr11	8178001	8182000	3999	OsKitaake11g089900
Deletion	Chr7	8301454	8301456	2
Deletion	Chr9	12728768	12728780	12
Deletion	Chr6	15008824	15008828	4
Deletion	Chr12	15839475	15839478	3
Deletion	Chr7	19197333	19197345	12
Deletion	Chr12	20188501	20188510	9
Deletion	Chr11	26696397	26696408	11
Deletion	Chr7	27259175	27259176	1
Deletion	Chr11	27673961	27673963	2
Deletion	Chr11	29494129	29494135	6	OsKitaake11g242700
Deletion	Chr3	30943952	30943955	3
Deletion	Chr1	31659065	31659076	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	22239132	22305108

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes