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| Mutant Information |
|---|
| Mutant Name | FN2362 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2362 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 347788 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 3891842 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 25903996 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 29247809 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 9696684 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 19911317 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 21740959 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27355566 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 31823572 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 34982988 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g365400 |
| SBS | Chr3 | 5330226 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9354249 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 27255664 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6628328 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9465966 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19740842 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 19740844 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 4236601 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6859219 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8675839 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10916471 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr5 | 21977316 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 27791173 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30457747 | A-C | Hetero | INTRON | |
| SBS | Chr8 | 104627 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 19238744 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 23023358 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13265269 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 13514252 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15268098 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24152822 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28620745 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 6655440 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 6655443 | G-T | Hetero | INTRON | |
| SBS | Chr12 | 13040534 | G-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1886210 | 1886212 | 2 | |
| Deletion | Chr1 | 2066138 | 2066142 | 4 | |
| Deletion | Chr2 | 5790131 | 5790146 | 15 | |
| Deletion | Chr11 | 7428870 | 7428871 | 1 | |
| Deletion | Chr6 | 7570237 | 7570241 | 4 | |
| Deletion | Chr5 | 20901119 | 20901120 | 1 | |
| Deletion | Chr2 | 25057569 | 25057571 | 2 | |
| Deletion | Chr7 | 25781327 | 25781329 | 2 | |
| Deletion | Chr2 | 26071676 | 26071683 | 7 | |
| Deletion | Chr6 | 26194358 | 26194364 | 6 | OsKitaake06g234400 |
| Deletion | Chr3 | 29125823 | 29125830 | 7 | |
| Deletion | Chr11 | 29176208 | 29176214 | 6 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 4854931 | 4854934 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 22340020 | 23207548 |