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Mutant Information

Mutant Name	FN2364 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2364 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4497952 T-C Hetero INTERGENIC
SBS Chr1 16901492 A-C Hetero INTERGENIC
SBS Chr1 17951181 T-C Hetero INTERGENIC
SBS Chr1 23052954 G-A Hetero INTERGENIC
SBS Chr1 23151873 C-T Hetero INTERGENIC
SBS Chr1 25807298 T-G Hetero INTERGENIC
SBS Chr1 32358228 A-G Hetero INTERGENIC
SBS Chr2 1435381 G-T Hetero INTRON
SBS Chr2 4799768 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g066400
SBS Chr2 27421030 C-T Hetero INTERGENIC
SBS Chr3 12457426 G-T Homo UTR_3_PRIME
SBS Chr3 14055567 C-G Homo INTRON
SBS Chr3 26403638 T-C Hetero INTERGENIC
SBS Chr3 34244318 C-A Homo INTERGENIC
SBS Chr4 31969217 C-T Homo INTERGENIC
SBS Chr5 2156292 T-C Homo INTRON
SBS Chr5 12153257 C-T Homo INTERGENIC
SBS Chr5 25231253 G-T Homo INTERGENIC
SBS Chr5 26003767 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g229600
SBS Chr6 12923290 G-C Hetero INTERGENIC
SBS Chr7 2911887 G-A Homo INTERGENIC
SBS Chr7 4784144 G-A Hetero INTERGENIC
SBS Chr7 17296652 T-C Hetero INTERGENIC
SBS Chr8 238696 C-G Hetero INTERGENIC
SBS Chr8 7737940 A-C Hetero INTERGENIC
SBS Chr8 23138476 G-A Hetero INTERGENIC
SBS Chr8 24915276 A-G Hetero INTERGENIC
SBS Chr9 1247739 C-G Hetero INTERGENIC
SBS Chr9 8596412 A-T Hetero INTERGENIC
SBS Chr9 8599313 G-A Hetero INTERGENIC
SBS Chr9 22426266 T-C Hetero INTERGENIC
SBS Chr10 17982040 C-T Hetero INTERGENIC
SBS Chr10 19460759 C-A Homo INTERGENIC
SBS Chr10 22628933 C-G Hetero INTERGENIC
SBS Chr11 20659356 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g161800
SBS Chr11 23507876 A-T Homo INTERGENIC
SBS Chr11 23521290 T-C Homo INTERGENIC
SBS Chr11 26115857 C-T Hetero INTERGENIC
SBS Chr12 1292330 T-A Homo SPLICE_SITE_REGION
SBS Chr12 2179219 C-T Homo INTERGENIC
SBS Chr12 17948841 T-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63329 63334 5
Deletion Chr10 305487 305491 4
Deletion Chr6 1914727 1914736 9 OsKitaake06g023800
Deletion Chr1 4870703 4870704 1
Deletion Chr10 5156001 5915000 758999 33
Deletion Chr5 6545556 6545567 11
Deletion Chr12 8211687 8211701 14
Deletion Chr7 13329733 13329750 17
Deletion Chr9 18208899 18208901 2
Deletion Chr5 24205125 24205133 8
Deletion Chr3 24941858 24941865 7

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 24444534 24444538 3
Insertion Chr3 28955954 28955957 2
Insertion Chr3 33783152 33783155 2
Insertion Chr7 6594621 6594624 2
Insertion Chr9 19130534 19130537 2
Insertion Chr9 19991864 19991868 3
Insertion Chr5 13240544 13240547 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 5623282 6269467 OsKitaake04g031350
Inversion Chr9 10973674 11099563
Inversion Chr9 10973676 11099571

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 6402735 Chr4 5623288

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4497952	T-C	Hetero	INTERGENIC
SBS	Chr1	16901492	A-C	Hetero	INTERGENIC
SBS	Chr1	17951181	T-C	Hetero	INTERGENIC
SBS	Chr1	23052954	G-A	Hetero	INTERGENIC
SBS	Chr1	23151873	C-T	Hetero	INTERGENIC
SBS	Chr1	25807298	T-G	Hetero	INTERGENIC
SBS	Chr1	32358228	A-G	Hetero	INTERGENIC
SBS	Chr2	1435381	G-T	Hetero	INTRON
SBS	Chr2	4799768	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g066400
SBS	Chr2	27421030	C-T	Hetero	INTERGENIC
SBS	Chr3	12457426	G-T	Homo	UTR_3_PRIME
SBS	Chr3	14055567	C-G	Homo	INTRON
SBS	Chr3	26403638	T-C	Hetero	INTERGENIC
SBS	Chr3	34244318	C-A	Homo	INTERGENIC
SBS	Chr4	31969217	C-T	Homo	INTERGENIC
SBS	Chr5	2156292	T-C	Homo	INTRON
SBS	Chr5	12153257	C-T	Homo	INTERGENIC
SBS	Chr5	25231253	G-T	Homo	INTERGENIC
SBS	Chr5	26003767	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g229600
SBS	Chr6	12923290	G-C	Hetero	INTERGENIC
SBS	Chr7	2911887	G-A	Homo	INTERGENIC
SBS	Chr7	4784144	G-A	Hetero	INTERGENIC
SBS	Chr7	17296652	T-C	Hetero	INTERGENIC
SBS	Chr8	238696	C-G	Hetero	INTERGENIC
SBS	Chr8	7737940	A-C	Hetero	INTERGENIC
SBS	Chr8	23138476	G-A	Hetero	INTERGENIC
SBS	Chr8	24915276	A-G	Hetero	INTERGENIC
SBS	Chr9	1247739	C-G	Hetero	INTERGENIC
SBS	Chr9	8596412	A-T	Hetero	INTERGENIC
SBS	Chr9	8599313	G-A	Hetero	INTERGENIC
SBS	Chr9	22426266	T-C	Hetero	INTERGENIC
SBS	Chr10	17982040	C-T	Hetero	INTERGENIC
SBS	Chr10	19460759	C-A	Homo	INTERGENIC
SBS	Chr10	22628933	C-G	Hetero	INTERGENIC
SBS	Chr11	20659356	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g161800
SBS	Chr11	23507876	A-T	Homo	INTERGENIC
SBS	Chr11	23521290	T-C	Homo	INTERGENIC
SBS	Chr11	26115857	C-T	Hetero	INTERGENIC
SBS	Chr12	1292330	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr12	2179219	C-T	Homo	INTERGENIC
SBS	Chr12	17948841	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63329	63334	5
Deletion	Chr10	305487	305491	4
Deletion	Chr6	1914727	1914736	9	OsKitaake06g023800
Deletion	Chr1	4870703	4870704	1
Deletion	Chr10	5156001	5915000	758999	33
Deletion	Chr5	6545556	6545567	11
Deletion	Chr12	8211687	8211701	14
Deletion	Chr7	13329733	13329750	17
Deletion	Chr9	18208899	18208901	2
Deletion	Chr5	24205125	24205133	8
Deletion	Chr3	24941858	24941865	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5623282	6269467	OsKitaake04g031350
Inversion	Chr9	10973674	11099563
Inversion	Chr9	10973676	11099571

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes