Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2365 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2365 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 36780408 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 39500376 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 20931818 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 21315271 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 4733455 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g068600 |
| SBS | Chr3 | 16664432 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26169642 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 26932372 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33187380 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33187391 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 33187392 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 4090685 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14100729 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 16100705 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 1816933 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 6403388 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27137981 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 13287113 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 16905999 | T-C | Homo | INTRON | |
| SBS | Chr10 | 16906000 | C-T | Homo | INTRON | |
| SBS | Chr10 | 16906004 | C-T | Homo | INTRON | |
| SBS | Chr10 | 18756393 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 9966107 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21655961 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g171400 |
| SBS | Chr11 | 21659549 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 23622723 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13612881 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 20395219 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21917720 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 24874062 | T-G | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 2870001 | 2875000 | 4999 | OsKitaake11g040600 |
| Deletion | Chr8 | 8084125 | 8084127 | 2 | OsKitaake08g073900 |
| Deletion | Chr5 | 10043148 | 10043167 | 19 | |
| Deletion | Chr1 | 11332612 | 11332620 | 8 | |
| Deletion | Chr7 | 16825001 | 17028000 | 202999 | 10 |
| Deletion | Chr2 | 18168022 | 18168025 | 3 | |
| Deletion | Chr2 | 18604514 | 18604516 | 2 | |
| Deletion | Chr3 | 20143020 | 20143022 | 2 | |
| Deletion | Chr5 | 25382277 | 25382278 | 1 | OsKitaake05g221700 |
| Deletion | Chr11 | 26692277 | 26692279 | 2 | |
| Deletion | Chr6 | 28068310 | 28068324 | 14 | |
| Deletion | Chr3 | 29115792 | 29115793 | 1 | |
| Deletion | Chr3 | 33188528 | 33188531 | 3 | |
| Deletion | Chr1 | 40564940 | 40564941 | 1 | OsKitaake01g440600 |
| Deletion | Chr1 | 41874968 | 41874969 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 30002164 | 30002167 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2226679 | 2982892 | |
| Inversion | Chr10 | 2674556 | 2982903 |