Search Kitaake

Mutant Information

Mutant Name	FN2366 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2366 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22276392 C-A Homo SYNONYMOUS_CODING
SBS Chr1 28397967 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g275000
SBS Chr2 6455141 G-T Hetero INTERGENIC
SBS Chr2 31933199 G-T Homo INTERGENIC
SBS Chr2 32192909 T-A Homo UTR_3_PRIME
SBS Chr3 23419031 T-G Hetero INTERGENIC
SBS Chr4 6018503 T-G Hetero INTERGENIC
SBS Chr4 9408901 G-A Homo INTERGENIC
SBS Chr4 10859900 G-A Homo INTERGENIC
SBS Chr4 18207381 A-G Homo INTERGENIC
SBS Chr4 23657727 G-T Hetero INTRON
SBS Chr4 28730484 A-G Homo NON_SYNONYMOUS_CODING OsKitaake04g215400
SBS Chr4 28730485 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g215400
SBS Chr5 22033867 A-T Hetero UTR_5_PRIME
SBS Chr5 22384939 G-T Hetero INTERGENIC
SBS Chr6 28115590 T-A Hetero INTERGENIC
SBS Chr7 1739029 A-T Hetero INTRON
SBS Chr7 20667535 G-A Hetero INTERGENIC
SBS Chr8 26347847 C-A Hetero INTERGENIC
SBS Chr9 6285820 T-C Homo INTERGENIC
SBS Chr9 15621918 A-T Homo INTERGENIC
SBS Chr10 15817336 C-T Hetero INTERGENIC
SBS Chr10 17790247 C-A Homo INTRON
SBS Chr10 18626113 T-C Hetero INTERGENIC
SBS Chr10 18820741 T-A Hetero INTERGENIC
SBS Chr10 18825137 G-T Hetero INTERGENIC
SBS Chr10 19924725 T-C Hetero INTRON
SBS Chr10 20023124 G-A Hetero INTERGENIC
SBS Chr11 16119541 C-T Homo INTERGENIC
SBS Chr11 19267858 A-G Homo INTERGENIC
SBS Chr11 27462805 T-C Homo INTERGENIC
SBS Chr12 10123081 C-T Hetero INTRON
SBS Chr12 19002606 C-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1748108 1748111 3
Deletion Chr7 2097757 2097763 6
Deletion Chr10 3445826 3445833 7
Deletion Chr9 6300381 6300391 10
Deletion Chr10 7449750 7449754 4
Deletion Chr2 11035347 11035362 15
Deletion Chr4 11216268 11216269 1
Deletion Chr1 12713836 12713837 1
Deletion Chr11 13914383 13914385 2
Deletion Chr6 14064041 14064047 6
Deletion Chr1 21144783 21144784 1
Deletion Chr9 21714492 21714495 3
Deletion Chr2 24818277 24818286 9
Deletion Chr1 29266405 29266406 1
Deletion Chr3 35046522 35046524 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 35741096 35741099 2
Insertion Chr5 17181878 17181881 2
Insertion Chr5 20448834 20448837 2
Insertion Chr10 5654293 5654298 4
Insertion Chr12 12502632 12502636 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 10835857 11060984 OsKitaake08g098800
Inversion Chr4 28349336 28556278 OsKitaake04g213500
Inversion Chr4 28556288 29025633 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22276392	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	28397967	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g275000
SBS	Chr2	6455141	G-T	Hetero	INTERGENIC
SBS	Chr2	31933199	G-T	Homo	INTERGENIC
SBS	Chr2	32192909	T-A	Homo	UTR_3_PRIME
SBS	Chr3	23419031	T-G	Hetero	INTERGENIC
SBS	Chr4	6018503	T-G	Hetero	INTERGENIC
SBS	Chr4	9408901	G-A	Homo	INTERGENIC
SBS	Chr4	10859900	G-A	Homo	INTERGENIC
SBS	Chr4	18207381	A-G	Homo	INTERGENIC
SBS	Chr4	23657727	G-T	Hetero	INTRON
SBS	Chr4	28730484	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g215400
SBS	Chr4	28730485	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g215400
SBS	Chr5	22033867	A-T	Hetero	UTR_5_PRIME
SBS	Chr5	22384939	G-T	Hetero	INTERGENIC
SBS	Chr6	28115590	T-A	Hetero	INTERGENIC
SBS	Chr7	1739029	A-T	Hetero	INTRON
SBS	Chr7	20667535	G-A	Hetero	INTERGENIC
SBS	Chr8	26347847	C-A	Hetero	INTERGENIC
SBS	Chr9	6285820	T-C	Homo	INTERGENIC
SBS	Chr9	15621918	A-T	Homo	INTERGENIC
SBS	Chr10	15817336	C-T	Hetero	INTERGENIC
SBS	Chr10	17790247	C-A	Homo	INTRON
SBS	Chr10	18626113	T-C	Hetero	INTERGENIC
SBS	Chr10	18820741	T-A	Hetero	INTERGENIC
SBS	Chr10	18825137	G-T	Hetero	INTERGENIC
SBS	Chr10	19924725	T-C	Hetero	INTRON
SBS	Chr10	20023124	G-A	Hetero	INTERGENIC
SBS	Chr11	16119541	C-T	Homo	INTERGENIC
SBS	Chr11	19267858	A-G	Homo	INTERGENIC
SBS	Chr11	27462805	T-C	Homo	INTERGENIC
SBS	Chr12	10123081	C-T	Hetero	INTRON
SBS	Chr12	19002606	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1748108	1748111	3
Deletion	Chr7	2097757	2097763	6
Deletion	Chr10	3445826	3445833	7
Deletion	Chr9	6300381	6300391	10
Deletion	Chr10	7449750	7449754	4
Deletion	Chr2	11035347	11035362	15
Deletion	Chr4	11216268	11216269	1
Deletion	Chr1	12713836	12713837	1
Deletion	Chr11	13914383	13914385	2
Deletion	Chr6	14064041	14064047	6
Deletion	Chr1	21144783	21144784	1
Deletion	Chr9	21714492	21714495	3
Deletion	Chr2	24818277	24818286	9
Deletion	Chr1	29266405	29266406	1
Deletion	Chr3	35046522	35046524	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	10835857	11060984	OsKitaake08g098800
Inversion	Chr4	28349336	28556278	OsKitaake04g213500
Inversion	Chr4	28556288	29025633	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes