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| Mutant Information |
|---|
| Mutant Name | FN2370 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2370 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9775802 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g123900 |
| SBS | Chr1 | 12303644 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g149200 |
| SBS | Chr1 | 33431906 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35255652 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 41810160 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 8433295 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 8633252 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 8661900 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 11753564 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 24965939 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 25761596 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11610158 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22675232 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 31754158 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 32367957 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32367958 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21062967 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23243766 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3862530 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 28265216 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 23032389 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24965052 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 26940499 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 946468 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 12188243 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 14610512 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 14610521 | T-G | Homo | INTERGENIC | |
| SBS | Chr10 | 22478218 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 3376009 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20871274 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 14399228 | G-A | Homo | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 574573 | 574575 | 2 | |
| Deletion | Chr4 | 953264 | 953272 | 8 | |
| Deletion | Chr10 | 2732206 | 2732208 | 2 | OsKitaake10g022500 |
| Deletion | Chr4 | 13932901 | 13932907 | 6 | |
| Deletion | Chr12 | 14400484 | 14400491 | 7 | |
| Deletion | Chr5 | 15935001 | 15965000 | 29999 | 2 |
| Deletion | Chr10 | 21903001 | 22043000 | 139999 | 17 |
| Deletion | Chr4 | 25579448 | 25579455 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 4198314 | 4198317 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 15825296 | 15936441 | |
| Inversion | Chr5 | 15964450 | 16145449 |