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Mutant Information

Mutant Name	FN2372 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2372 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1625190 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g019800
SBS Chr1 23215072 C-T Homo INTERGENIC
SBS Chr2 12143139 A-G Hetero INTRON
SBS Chr2 13489674 T-C Hetero INTERGENIC
SBS Chr2 13926945 A-T Hetero INTERGENIC
SBS Chr2 23303239 A-G Hetero INTERGENIC
SBS Chr2 25870978 T-A Hetero UTR_5_PRIME
SBS Chr3 27241354 C-T Hetero INTERGENIC
SBS Chr3 33587728 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g360200
SBS Chr3 37000345 A-C Homo UTR_3_PRIME
SBS Chr4 1303952 C-G Homo INTERGENIC
SBS Chr4 3036564 C-T Hetero INTERGENIC
SBS Chr4 9892215 A-G Hetero INTERGENIC
SBS Chr5 5501755 T-C Hetero INTERGENIC
SBS Chr5 7877503 G-A Hetero INTERGENIC
SBS Chr5 7997107 G-A Hetero INTERGENIC
SBS Chr5 13718686 A-C Hetero INTERGENIC
SBS Chr5 17462219 T-C Hetero INTERGENIC
SBS Chr5 17475068 C-G Hetero INTERGENIC
SBS Chr5 29302706 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g278201
SBS Chr6 5455963 G-T Hetero UTR_3_PRIME
SBS Chr6 8026816 C-T Homo INTERGENIC
SBS Chr6 20471806 A-T Hetero INTRON
SBS Chr6 29192600 A-G Hetero INTERGENIC
SBS Chr7 4002189 A-G Hetero INTRON
SBS Chr7 6862420 C-T Hetero INTERGENIC
SBS Chr8 2986778 G-C Homo INTERGENIC
SBS Chr8 17273612 G-A Homo INTERGENIC
SBS Chr9 1454380 T-A Hetero INTERGENIC
SBS Chr9 2437210 C-T Hetero INTERGENIC
SBS Chr9 11627481 A-T Homo INTERGENIC
SBS Chr9 11980939 C-T Homo INTERGENIC
SBS Chr10 4850958 A-T Hetero INTERGENIC
SBS Chr10 9314197 C-T Hetero INTERGENIC
SBS Chr10 12676948 T-A Hetero INTERGENIC
SBS Chr10 23235472 G-T Hetero SYNONYMOUS_CODING
SBS Chr11 11792051 G-A Hetero INTERGENIC
SBS Chr11 13584000 T-C Hetero INTERGENIC
SBS Chr11 15072796 A-T Hetero INTERGENIC
SBS Chr12 9038195 T-A Homo INTERGENIC
SBS Chr12 9038196 G-A Homo INTERGENIC
SBS Chr12 12248313 T-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 523884 523885 1
Deletion Chr8 1025793 1025809 16
Deletion Chr7 1060606 1060618 12
Deletion Chr6 11276840 11276845 5
Deletion Chr10 14992900 14992904 4 OsKitaake10g093900
Deletion Chr7 17803140 17803147 7
Deletion Chr3 17825469 17825477 8
Deletion Chr6 19222467 19222477 10
Deletion Chr1 19417450 19417461 11
Deletion Chr10 22069904 22069913 9
Deletion Chr2 26597001 26597010 9
Deletion Chr4 26742306 26742308 2 OsKitaake04g193150
Deletion Chr3 27018465 27018467 2
Deletion Chr7 27038358 27038365 7 OsKitaake07g252700
Deletion Chr6 28320287 28320297 10
Deletion Chr3 33382112 33382120 8
Deletion Chr3 33570060 33570068 8
Deletion Chr4 34688001 34696000 7999 OsKitaake04g289500

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28937012 28937015 2
Insertion Chr3 11301160 11301162 1
Insertion Chr8 433521 433526 4
Insertion Chr8 16253679 16253682 2
Insertion Chr10 10005847 10005850 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 2875775 3579151 OsKitaake11g040700
Inversion Chr11 2875784 3579150 OsKitaake11g040700

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 2704129 Chr7 17228649
Translocation Chr7 18404758 Chr4 34687756 OsKitaake07g149200
Translocation Chr7 18404762 Chr4 34696893 2
Translocation Chr11 25162028 Chr2 7425942

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1625190	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g019800
SBS	Chr1	23215072	C-T	Homo	INTERGENIC
SBS	Chr2	12143139	A-G	Hetero	INTRON
SBS	Chr2	13489674	T-C	Hetero	INTERGENIC
SBS	Chr2	13926945	A-T	Hetero	INTERGENIC
SBS	Chr2	23303239	A-G	Hetero	INTERGENIC
SBS	Chr2	25870978	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	27241354	C-T	Hetero	INTERGENIC
SBS	Chr3	33587728	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g360200
SBS	Chr3	37000345	A-C	Homo	UTR_3_PRIME
SBS	Chr4	1303952	C-G	Homo	INTERGENIC
SBS	Chr4	3036564	C-T	Hetero	INTERGENIC
SBS	Chr4	9892215	A-G	Hetero	INTERGENIC
SBS	Chr5	5501755	T-C	Hetero	INTERGENIC
SBS	Chr5	7877503	G-A	Hetero	INTERGENIC
SBS	Chr5	7997107	G-A	Hetero	INTERGENIC
SBS	Chr5	13718686	A-C	Hetero	INTERGENIC
SBS	Chr5	17462219	T-C	Hetero	INTERGENIC
SBS	Chr5	17475068	C-G	Hetero	INTERGENIC
SBS	Chr5	29302706	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g278201
SBS	Chr6	5455963	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	8026816	C-T	Homo	INTERGENIC
SBS	Chr6	20471806	A-T	Hetero	INTRON
SBS	Chr6	29192600	A-G	Hetero	INTERGENIC
SBS	Chr7	4002189	A-G	Hetero	INTRON
SBS	Chr7	6862420	C-T	Hetero	INTERGENIC
SBS	Chr8	2986778	G-C	Homo	INTERGENIC
SBS	Chr8	17273612	G-A	Homo	INTERGENIC
SBS	Chr9	1454380	T-A	Hetero	INTERGENIC
SBS	Chr9	2437210	C-T	Hetero	INTERGENIC
SBS	Chr9	11627481	A-T	Homo	INTERGENIC
SBS	Chr9	11980939	C-T	Homo	INTERGENIC
SBS	Chr10	4850958	A-T	Hetero	INTERGENIC
SBS	Chr10	9314197	C-T	Hetero	INTERGENIC
SBS	Chr10	12676948	T-A	Hetero	INTERGENIC
SBS	Chr10	23235472	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	11792051	G-A	Hetero	INTERGENIC
SBS	Chr11	13584000	T-C	Hetero	INTERGENIC
SBS	Chr11	15072796	A-T	Hetero	INTERGENIC
SBS	Chr12	9038195	T-A	Homo	INTERGENIC
SBS	Chr12	9038196	G-A	Homo	INTERGENIC
SBS	Chr12	12248313	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	523884	523885	1
Deletion	Chr8	1025793	1025809	16
Deletion	Chr7	1060606	1060618	12
Deletion	Chr6	11276840	11276845	5
Deletion	Chr10	14992900	14992904	4	OsKitaake10g093900
Deletion	Chr7	17803140	17803147	7
Deletion	Chr3	17825469	17825477	8
Deletion	Chr6	19222467	19222477	10
Deletion	Chr1	19417450	19417461	11
Deletion	Chr10	22069904	22069913	9
Deletion	Chr2	26597001	26597010	9
Deletion	Chr4	26742306	26742308	2	OsKitaake04g193150
Deletion	Chr3	27018465	27018467	2
Deletion	Chr7	27038358	27038365	7	OsKitaake07g252700
Deletion	Chr6	28320287	28320297	10
Deletion	Chr3	33382112	33382120	8
Deletion	Chr3	33570060	33570068	8
Deletion	Chr4	34688001	34696000	7999	OsKitaake04g289500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2875775	3579151	OsKitaake11g040700
Inversion	Chr11	2875784	3579150	OsKitaake11g040700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes