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Mutant Information

Mutant Name	FN2373 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2373 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10691560 C-T Hetero SPLICE_SITE_REGION
SBS Chr1 10691561 C-T Hetero SPLICE_SITE_REGION
SBS Chr1 19725707 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g196200
SBS Chr1 20504924 C-T Hetero INTERGENIC
SBS Chr1 31715521 T-G Hetero INTRON
SBS Chr1 33544167 C-T Homo INTERGENIC
SBS Chr1 35660841 C-A Hetero INTERGENIC
SBS Chr1 43697485 T-C Homo INTERGENIC
SBS Chr2 11210776 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g130600
SBS Chr2 18605257 C-T Homo INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 32047905 C-G Hetero INTERGENIC
SBS Chr2 35123659 A-T Homo SPLICE_SITE_DONOR OsKitaake02g367400
SBS Chr3 14689614 G-A Hetero INTERGENIC
SBS Chr3 24422944 T-A Homo INTERGENIC
SBS Chr4 2352100 G-T Homo INTERGENIC
SBS Chr4 6109476 G-A Hetero INTERGENIC
SBS Chr4 19914323 G-T Hetero INTERGENIC
SBS Chr4 22022733 C-T Hetero INTERGENIC
SBS Chr4 26464631 C-A Hetero INTERGENIC
SBS Chr4 26464632 C-A Hetero INTERGENIC
SBS Chr4 36953621 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g323601
SBS Chr5 3577369 T-C Hetero UTR_3_PRIME
SBS Chr5 7228264 A-C Hetero INTERGENIC
SBS Chr5 8410349 A-T Homo INTERGENIC
SBS Chr5 21033937 T-C Hetero INTERGENIC
SBS Chr6 3084792 C-A Hetero INTERGENIC
SBS Chr6 27339121 A-C Homo INTRON
SBS Chr6 27438416 T-A Homo INTRON
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr7 8482029 T-A Hetero INTERGENIC
SBS Chr7 11439964 G-A Homo INTERGENIC
SBS Chr8 11166839 C-A Hetero INTERGENIC
SBS Chr8 15028786 C-T Hetero INTERGENIC
SBS Chr8 15857016 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g122300
SBS Chr8 17085733 G-A Hetero INTERGENIC
SBS Chr8 17085734 A-G Hetero INTERGENIC
SBS Chr8 20034736 G-A Hetero INTERGENIC
SBS Chr8 23126288 A-G Hetero INTERGENIC
SBS Chr8 23282204 G-A Hetero INTERGENIC
SBS Chr9 6114809 C-T Hetero INTERGENIC
SBS Chr9 9913968 A-G Hetero INTERGENIC
SBS Chr9 13507041 T-C Hetero INTERGENIC
SBS Chr9 16955226 C-T Hetero INTERGENIC
SBS Chr9 21577625 T-C Hetero UTR_3_PRIME
SBS Chr10 5223756 G-A Hetero INTERGENIC
SBS Chr10 12201876 C-T Hetero INTERGENIC
SBS Chr11 19510788 G-A Hetero INTERGENIC
SBS Chr12 257712 A-G Homo INTERGENIC
SBS Chr12 7693080 A-G Homo INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 690140 690170 30
Deletion Chr5 1674402 1674406 4
Deletion Chr1 4711823 4711828 5
Deletion Chr7 5277242 5277246 4
Deletion Chr1 5542720 5542721 1
Deletion Chr8 5906810 5906812 2
Deletion Chr11 7892803 7892818 15
Deletion Chr1 7941029 7941030 1
Deletion Chr3 13151992 13151995 3
Deletion Chr5 15119682 15119693 11 OsKitaake05g115500
Deletion Chr3 15331001 15453000 121999 6
Deletion Chr5 15441329 15441333 4
Deletion Chr3 15459001 15517000 57999 3
Deletion Chr7 16571150 16571151 1
Deletion Chr12 17046097 17046099 2
Deletion Chr8 17062001 17084000 21999 2
Deletion Chr8 17119656 17119658 2
Deletion Chr10 18994926 18994933 7
Deletion Chr10 19383141 19383142 1
Deletion Chr3 19966227 19966243 16
Deletion Chr2 20704877 20704878 1
Deletion Chr5 20833035 20833036 1
Deletion Chr5 23409965 23409969 4
Deletion Chr4 25373444 25373446 2
Deletion Chr3 26898319 26898321 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43802341 43802344 2
Insertion Chr5 29412133 29412138 4
Insertion Chr9 12736075 12736078 2
Insertion Chr9 19343328 19343332 3
Insertion Chr10 21334827 21334830 2
Insertion Chr12 17393184 17393187 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10691560	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	10691561	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	19725707	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g196200
SBS	Chr1	20504924	C-T	Hetero	INTERGENIC
SBS	Chr1	31715521	T-G	Hetero	INTRON
SBS	Chr1	33544167	C-T	Homo	INTERGENIC
SBS	Chr1	35660841	C-A	Hetero	INTERGENIC
SBS	Chr1	43697485	T-C	Homo	INTERGENIC
SBS	Chr2	11210776	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g130600
SBS	Chr2	18605257	C-T	Homo	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	32047905	C-G	Hetero	INTERGENIC
SBS	Chr2	35123659	A-T	Homo	SPLICE_SITE_DONOR	OsKitaake02g367400
SBS	Chr3	14689614	G-A	Hetero	INTERGENIC
SBS	Chr3	24422944	T-A	Homo	INTERGENIC
SBS	Chr4	2352100	G-T	Homo	INTERGENIC
SBS	Chr4	6109476	G-A	Hetero	INTERGENIC
SBS	Chr4	19914323	G-T	Hetero	INTERGENIC
SBS	Chr4	22022733	C-T	Hetero	INTERGENIC
SBS	Chr4	26464631	C-A	Hetero	INTERGENIC
SBS	Chr4	26464632	C-A	Hetero	INTERGENIC
SBS	Chr4	36953621	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g323601
SBS	Chr5	3577369	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	7228264	A-C	Hetero	INTERGENIC
SBS	Chr5	8410349	A-T	Homo	INTERGENIC
SBS	Chr5	21033937	T-C	Hetero	INTERGENIC
SBS	Chr6	3084792	C-A	Hetero	INTERGENIC
SBS	Chr6	27339121	A-C	Homo	INTRON
SBS	Chr6	27438416	T-A	Homo	INTRON
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr7	8482029	T-A	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Homo	INTERGENIC
SBS	Chr8	11166839	C-A	Hetero	INTERGENIC
SBS	Chr8	15028786	C-T	Hetero	INTERGENIC
SBS	Chr8	15857016	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g122300
SBS	Chr8	17085733	G-A	Hetero	INTERGENIC
SBS	Chr8	17085734	A-G	Hetero	INTERGENIC
SBS	Chr8	20034736	G-A	Hetero	INTERGENIC
SBS	Chr8	23126288	A-G	Hetero	INTERGENIC
SBS	Chr8	23282204	G-A	Hetero	INTERGENIC
SBS	Chr9	6114809	C-T	Hetero	INTERGENIC
SBS	Chr9	9913968	A-G	Hetero	INTERGENIC
SBS	Chr9	13507041	T-C	Hetero	INTERGENIC
SBS	Chr9	16955226	C-T	Hetero	INTERGENIC
SBS	Chr9	21577625	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	5223756	G-A	Hetero	INTERGENIC
SBS	Chr10	12201876	C-T	Hetero	INTERGENIC
SBS	Chr11	19510788	G-A	Hetero	INTERGENIC
SBS	Chr12	257712	A-G	Homo	INTERGENIC
SBS	Chr12	7693080	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	690140	690170	30
Deletion	Chr5	1674402	1674406	4
Deletion	Chr1	4711823	4711828	5
Deletion	Chr7	5277242	5277246	4
Deletion	Chr1	5542720	5542721	1
Deletion	Chr8	5906810	5906812	2
Deletion	Chr11	7892803	7892818	15
Deletion	Chr1	7941029	7941030	1
Deletion	Chr3	13151992	13151995	3
Deletion	Chr5	15119682	15119693	11	OsKitaake05g115500
Deletion	Chr3	15331001	15453000	121999	6
Deletion	Chr5	15441329	15441333	4
Deletion	Chr3	15459001	15517000	57999	3
Deletion	Chr7	16571150	16571151	1
Deletion	Chr12	17046097	17046099	2
Deletion	Chr8	17062001	17084000	21999	2
Deletion	Chr8	17119656	17119658	2
Deletion	Chr10	18994926	18994933	7
Deletion	Chr10	19383141	19383142	1
Deletion	Chr3	19966227	19966243	16
Deletion	Chr2	20704877	20704878	1
Deletion	Chr5	20833035	20833036	1
Deletion	Chr5	23409965	23409969	4
Deletion	Chr4	25373444	25373446	2
Deletion	Chr3	26898319	26898321	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes