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Mutant Information

Mutant Name	FN2374 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2374 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22616028 G-T Homo INTRON
SBS Chr2 4905428 T-A Homo INTERGENIC
SBS Chr2 6316557 T-A Hetero INTERGENIC
SBS Chr2 7752434 G-A Hetero INTERGENIC
SBS Chr2 11165575 C-T Hetero INTRON
SBS Chr2 20539417 C-T Hetero INTERGENIC
SBS Chr2 26882234 T-C Hetero INTERGENIC
SBS Chr3 2593039 G-T Homo INTERGENIC
SBS Chr3 16575979 C-A Hetero INTRON
SBS Chr3 16575981 T-A Hetero INTRON
SBS Chr3 16709419 A-T Hetero INTRON
SBS Chr3 22320730 G-T Hetero INTRON
SBS Chr4 13497363 G-A Hetero INTERGENIC
SBS Chr4 20478873 C-A Hetero INTERGENIC
SBS Chr4 29846454 C-T Hetero INTERGENIC
SBS Chr4 34847950 G-T Hetero INTERGENIC
SBS Chr5 4847504 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 6533741 C-T Hetero INTERGENIC
SBS Chr5 15013676 A-T Hetero INTERGENIC
SBS Chr5 24844685 G-C Homo INTERGENIC
SBS Chr7 714117 C-A Hetero INTERGENIC
SBS Chr7 4869131 G-T Hetero INTERGENIC
SBS Chr7 9221102 C-T Homo INTRON
SBS Chr7 12736827 C-T Hetero INTERGENIC
SBS Chr7 24847342 C-A Hetero INTERGENIC
SBS Chr7 29011300 A-T Hetero INTERGENIC
SBS Chr8 2276161 A-T Hetero INTERGENIC
SBS Chr8 10628704 G-A Hetero INTERGENIC
SBS Chr8 16382995 C-G Homo INTERGENIC
SBS Chr8 18976214 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 22396023 T-A Hetero INTERGENIC
SBS Chr8 27688899 A-T Homo UTR_5_PRIME
SBS Chr9 8279362 A-T Homo INTERGENIC
SBS Chr9 17988335 G-A Hetero INTERGENIC
SBS Chr9 18002521 G-A Hetero INTERGENIC
SBS Chr10 238298 T-C Homo INTRON
SBS Chr10 3125604 G-C Hetero INTERGENIC
SBS Chr10 5062565 T-C Homo INTERGENIC
SBS Chr10 9117787 C-T Homo INTERGENIC
SBS Chr10 16760799 T-C Hetero INTRON
SBS Chr10 18376138 C-T Hetero INTERGENIC
SBS Chr10 18570081 C-T Hetero INTERGENIC
SBS Chr10 19417569 T-A Hetero INTERGENIC
SBS Chr11 19371869 A-G Hetero UTR_3_PRIME
SBS Chr12 1228518 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1846562 1846572 10
Deletion Chr10 5129168 5129185 17
Deletion Chr10 5971165 5971174 9
Deletion Chr10 10242544 10242547 3
Deletion Chr3 15050695 15050697 2
Deletion Chr5 20108173 20108183 10
Deletion Chr5 20822001 20832000 9999 2
Deletion Chr5 24644233 24644240 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10740525 10740529 3
Insertion Chr1 41179605 41179608 2
Insertion Chr3 3735830 3735834 3
Insertion Chr7 23057198 23057201 2
Insertion Chr9 22268287 22268290 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6192334 7085985 OsKitaake04g030800
Inversion Chr4 6192340 7085986 OsKitaake04g030800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22616028	G-T	Homo	INTRON
SBS	Chr2	4905428	T-A	Homo	INTERGENIC
SBS	Chr2	6316557	T-A	Hetero	INTERGENIC
SBS	Chr2	7752434	G-A	Hetero	INTERGENIC
SBS	Chr2	11165575	C-T	Hetero	INTRON
SBS	Chr2	20539417	C-T	Hetero	INTERGENIC
SBS	Chr2	26882234	T-C	Hetero	INTERGENIC
SBS	Chr3	2593039	G-T	Homo	INTERGENIC
SBS	Chr3	16575979	C-A	Hetero	INTRON
SBS	Chr3	16575981	T-A	Hetero	INTRON
SBS	Chr3	16709419	A-T	Hetero	INTRON
SBS	Chr3	22320730	G-T	Hetero	INTRON
SBS	Chr4	13497363	G-A	Hetero	INTERGENIC
SBS	Chr4	20478873	C-A	Hetero	INTERGENIC
SBS	Chr4	29846454	C-T	Hetero	INTERGENIC
SBS	Chr4	34847950	G-T	Hetero	INTERGENIC
SBS	Chr5	4847504	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	6533741	C-T	Hetero	INTERGENIC
SBS	Chr5	15013676	A-T	Hetero	INTERGENIC
SBS	Chr5	24844685	G-C	Homo	INTERGENIC
SBS	Chr7	714117	C-A	Hetero	INTERGENIC
SBS	Chr7	4869131	G-T	Hetero	INTERGENIC
SBS	Chr7	9221102	C-T	Homo	INTRON
SBS	Chr7	12736827	C-T	Hetero	INTERGENIC
SBS	Chr7	24847342	C-A	Hetero	INTERGENIC
SBS	Chr7	29011300	A-T	Hetero	INTERGENIC
SBS	Chr8	2276161	A-T	Hetero	INTERGENIC
SBS	Chr8	10628704	G-A	Hetero	INTERGENIC
SBS	Chr8	16382995	C-G	Homo	INTERGENIC
SBS	Chr8	18976214	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	22396023	T-A	Hetero	INTERGENIC
SBS	Chr8	27688899	A-T	Homo	UTR_5_PRIME
SBS	Chr9	8279362	A-T	Homo	INTERGENIC
SBS	Chr9	17988335	G-A	Hetero	INTERGENIC
SBS	Chr9	18002521	G-A	Hetero	INTERGENIC
SBS	Chr10	238298	T-C	Homo	INTRON
SBS	Chr10	3125604	G-C	Hetero	INTERGENIC
SBS	Chr10	5062565	T-C	Homo	INTERGENIC
SBS	Chr10	9117787	C-T	Homo	INTERGENIC
SBS	Chr10	16760799	T-C	Hetero	INTRON
SBS	Chr10	18376138	C-T	Hetero	INTERGENIC
SBS	Chr10	18570081	C-T	Hetero	INTERGENIC
SBS	Chr10	19417569	T-A	Hetero	INTERGENIC
SBS	Chr11	19371869	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	1228518	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1846562	1846572	10
Deletion	Chr10	5129168	5129185	17
Deletion	Chr10	5971165	5971174	9
Deletion	Chr10	10242544	10242547	3
Deletion	Chr3	15050695	15050697	2
Deletion	Chr5	20108173	20108183	10
Deletion	Chr5	20822001	20832000	9999	2
Deletion	Chr5	24644233	24644240	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6192334	7085985	OsKitaake04g030800
Inversion	Chr4	6192340	7085986	OsKitaake04g030800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes