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| Mutant Information |
|---|
| Mutant Name | FN2376 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2376 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 970457 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g011200 |
| SBS | Chr1 | 8125176 | T-G | Hetero | INTRON | |
| SBS | Chr1 | 20595984 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 27283157 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 30295694 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 37525167 | G-A | Homo | INTRON | |
| SBS | Chr2 | 16552627 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 926186 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 3682464 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 13648452 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 25400847 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 1947847 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 25627446 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 28377004 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g263900 |
| SBS | Chr6 | 19805138 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 20232442 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6233756 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 9671256 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8370902 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8370903 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23550235 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23634521 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2505416 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 18070142 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 21251532 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 4929065 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5585476 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22466777 | T-A | Hetero | INTRON |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 4799001 | 4924000 | 124999 | 12 |
| Deletion | Chr11 | 5403062 | 5403064 | 2 | |
| Deletion | Chr7 | 10291197 | 10291199 | 2 | |
| Deletion | Chr6 | 23450303 | 23450306 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 6785620 | 6785625 | 4 | |
| Insertion | Chr10 | 2008315 | 2008318 | 2 | |
| Insertion | Chr12 | 16602304 | 16602306 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 19792134 | 20454955 | |
| Inversion | Chr6 | 19792136 | 20454956 | |
| Inversion | Chr9 | 20143000 | 20839150 | OsKitaake09g169000 |
| Inversion | Chr9 | 20143017 | 20506803 | OsKitaake09g169000 |
| Inversion | Chr9 | 22307093 | 22386616 | OsKitaake09g203100 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 4796438 | Chr5 | 6913237 | OsKitaake10g034666 |
| Translocation | Chr10 | 4799419 | Chr5 | 6913231 | |
| Translocation | Chr6 | 7839581 | Chr1 | 13643838 | |
| Translocation | Chr6 | 7839591 | Chr1 | 13724855 | |
| Translocation | Chr10 | 9508400 | Chr9 | 21251436 | OsKitaake09g183900 |
| Translocation | Chr6 | 20568470 | Chr1 | 12644993 |