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Mutant Information

Mutant Name	FN2377 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2377 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32630381 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g330900
SBS Chr1 34907188 G-A Hetero INTERGENIC
SBS Chr1 40003159 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g433200
SBS Chr1 40344469 A-C Hetero INTERGENIC
SBS Chr2 10159089 A-T Hetero SPLICE_SITE_REGION
SBS Chr2 22240574 C-T Hetero INTERGENIC
SBS Chr2 27725067 A-G Hetero INTERGENIC
SBS Chr2 27725068 T-C Hetero INTERGENIC
SBS Chr2 27725069 A-T Hetero INTERGENIC
SBS Chr4 17193652 G-A Homo INTERGENIC
SBS Chr4 18766779 G-A Homo INTERGENIC
SBS Chr5 8779612 C-T Homo INTERGENIC
SBS Chr5 14377771 C-T Homo INTERGENIC
SBS Chr6 5359793 G-A Homo INTERGENIC
SBS Chr6 8526100 T-C Hetero INTRON
SBS Chr6 9896181 C-T Hetero INTERGENIC
SBS Chr6 19720916 C-T Hetero INTERGENIC
SBS Chr6 21752887 G-A Hetero INTERGENIC
SBS Chr7 25285375 A-G Hetero INTRON
SBS Chr8 8001889 T-C Hetero INTERGENIC
SBS Chr8 11157496 A-G Hetero INTERGENIC
SBS Chr8 11531402 C-T Homo INTERGENIC
SBS Chr8 11531403 C-T Homo INTERGENIC
SBS Chr8 24554034 C-T Hetero INTRON
SBS Chr9 21842748 A-T Homo INTRON
SBS Chr9 22016058 G-A Homo INTERGENIC
SBS Chr10 979252 T-C Homo INTERGENIC
SBS Chr10 16527681 T-A Homo INTERGENIC
SBS Chr11 6297953 T-A Hetero INTERGENIC
SBS Chr11 9753561 C-A Hetero INTERGENIC
SBS Chr11 22047984 C-T Hetero INTERGENIC
SBS Chr12 8949058 G-T Hetero INTERGENIC
SBS Chr12 21362726 T-C Hetero INTERGENIC
SBS Chr12 21385955 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 24657283 A-G Hetero INTERGENIC
SBS Chr12 24657284 G-A Hetero INTERGENIC
SBS Chr12 26498546 C-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 401629 401631 2
Deletion Chr7 424388 424389 1
Deletion Chr7 1133399 1133407 8
Deletion Chr4 4745179 4745197 18
Deletion Chr3 5232804 5232809 5
Deletion Chr11 9518037 9518041 4
Deletion Chr8 12806335 12806344 9
Deletion Chr6 14827691 14827692 1
Deletion Chr8 17696431 17696439 8
Deletion Chr1 20071091 20071092 1
Deletion Chr6 20652254 20652256 2
Deletion Chr2 21157719 21157728 9
Deletion Chr1 22073001 22116000 42999 2
Deletion Chr5 23172067 23172068 1
Deletion Chr8 24339268 24339276 8
Deletion Chr4 26249420 26249441 21
Deletion Chr2 27742966 27742971 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8456384 8456388 3
Insertion Chr4 23059385 23059390 4
Insertion Chr6 16647037 16647040 2
Insertion Chr8 14991839 14991842 2
Insertion Chr12 10563642 10563645 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 26713255 26829752 OsKitaake12g223700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32630381	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g330900
SBS	Chr1	34907188	G-A	Hetero	INTERGENIC
SBS	Chr1	40003159	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g433200
SBS	Chr1	40344469	A-C	Hetero	INTERGENIC
SBS	Chr2	10159089	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr2	22240574	C-T	Hetero	INTERGENIC
SBS	Chr2	27725067	A-G	Hetero	INTERGENIC
SBS	Chr2	27725068	T-C	Hetero	INTERGENIC
SBS	Chr2	27725069	A-T	Hetero	INTERGENIC
SBS	Chr4	17193652	G-A	Homo	INTERGENIC
SBS	Chr4	18766779	G-A	Homo	INTERGENIC
SBS	Chr5	8779612	C-T	Homo	INTERGENIC
SBS	Chr5	14377771	C-T	Homo	INTERGENIC
SBS	Chr6	5359793	G-A	Homo	INTERGENIC
SBS	Chr6	8526100	T-C	Hetero	INTRON
SBS	Chr6	9896181	C-T	Hetero	INTERGENIC
SBS	Chr6	19720916	C-T	Hetero	INTERGENIC
SBS	Chr6	21752887	G-A	Hetero	INTERGENIC
SBS	Chr7	25285375	A-G	Hetero	INTRON
SBS	Chr8	8001889	T-C	Hetero	INTERGENIC
SBS	Chr8	11157496	A-G	Hetero	INTERGENIC
SBS	Chr8	11531402	C-T	Homo	INTERGENIC
SBS	Chr8	11531403	C-T	Homo	INTERGENIC
SBS	Chr8	24554034	C-T	Hetero	INTRON
SBS	Chr9	21842748	A-T	Homo	INTRON
SBS	Chr9	22016058	G-A	Homo	INTERGENIC
SBS	Chr10	979252	T-C	Homo	INTERGENIC
SBS	Chr10	16527681	T-A	Homo	INTERGENIC
SBS	Chr11	6297953	T-A	Hetero	INTERGENIC
SBS	Chr11	9753561	C-A	Hetero	INTERGENIC
SBS	Chr11	22047984	C-T	Hetero	INTERGENIC
SBS	Chr12	8949058	G-T	Hetero	INTERGENIC
SBS	Chr12	21362726	T-C	Hetero	INTERGENIC
SBS	Chr12	21385955	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	24657283	A-G	Hetero	INTERGENIC
SBS	Chr12	24657284	G-A	Hetero	INTERGENIC
SBS	Chr12	26498546	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	401629	401631	2
Deletion	Chr7	424388	424389	1
Deletion	Chr7	1133399	1133407	8
Deletion	Chr4	4745179	4745197	18
Deletion	Chr3	5232804	5232809	5
Deletion	Chr11	9518037	9518041	4
Deletion	Chr8	12806335	12806344	9
Deletion	Chr6	14827691	14827692	1
Deletion	Chr8	17696431	17696439	8
Deletion	Chr1	20071091	20071092	1
Deletion	Chr6	20652254	20652256	2
Deletion	Chr2	21157719	21157728	9
Deletion	Chr1	22073001	22116000	42999	2
Deletion	Chr5	23172067	23172068	1
Deletion	Chr8	24339268	24339276	8
Deletion	Chr4	26249420	26249441	21
Deletion	Chr2	27742966	27742971	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	26713255	26829752	OsKitaake12g223700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes