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Mutant Information

Mutant Name	FN2378 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2378 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 71

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1249860 T-G Hetero INTERGENIC
SBS Chr1 1249909 T-C Hetero INTERGENIC
SBS Chr1 13701453 C-T Hetero INTRON
SBS Chr1 17104851 C-T Hetero INTERGENIC
SBS Chr1 20951411 C-A Hetero INTERGENIC
SBS Chr2 1965989 C-T Hetero UTR_3_PRIME
SBS Chr2 2209652 G-T Hetero INTRON
SBS Chr2 4033708 T-A Hetero INTERGENIC
SBS Chr2 4722354 T-A Hetero INTERGENIC
SBS Chr2 8184285 T-G Hetero INTERGENIC
SBS Chr2 32419520 G-T Homo INTERGENIC
SBS Chr3 16849469 G-C Hetero INTERGENIC
SBS Chr3 17578890 C-T Hetero INTERGENIC
SBS Chr3 20202420 C-T Hetero INTERGENIC
SBS Chr3 23380386 T-G Hetero INTERGENIC
SBS Chr3 25716802 G-A Hetero INTERGENIC
SBS Chr3 32554744 A-G Homo INTERGENIC
SBS Chr4 3818019 T-C Hetero INTERGENIC
SBS Chr4 3887492 G-A Hetero INTERGENIC
SBS Chr4 4283523 A-G Homo INTERGENIC
SBS Chr4 10514449 C-T Hetero INTERGENIC
SBS Chr4 12296032 A-T Homo INTRON
SBS Chr4 14481322 C-A Hetero INTERGENIC
SBS Chr4 14722657 A-T Homo INTERGENIC
SBS Chr4 15350050 T-A Homo INTERGENIC
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr4 24606188 A-T Hetero INTERGENIC
SBS Chr4 25760619 C-T Hetero INTERGENIC
SBS Chr4 32668579 C-T Hetero INTERGENIC
SBS Chr4 34704779 A-T Hetero INTRON
SBS Chr6 2673057 C-A Hetero INTERGENIC
SBS Chr6 10465066 T-A Hetero INTERGENIC
SBS Chr6 21138232 A-G Hetero INTERGENIC
SBS Chr6 25213679 G-C Hetero INTERGENIC
SBS Chr6 27675151 G-A Homo INTERGENIC
SBS Chr6 27675152 C-A Homo INTERGENIC
SBS Chr6 30234976 G-C Hetero INTERGENIC
SBS Chr7 4138316 A-G Homo INTERGENIC
SBS Chr7 6138627 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g072700
SBS Chr7 7740915 C-T Hetero INTRON
SBS Chr7 8665632 G-A Hetero INTERGENIC
SBS Chr7 9729349 G-C Hetero INTERGENIC
SBS Chr7 9847372 G-A Hetero INTERGENIC
SBS Chr7 10343164 A-G Hetero INTERGENIC
SBS Chr7 13064398 G-C Hetero INTERGENIC
SBS Chr7 13755223 A-G Hetero INTERGENIC
SBS Chr7 13819778 T-A Hetero INTERGENIC
SBS Chr7 16151492 A-G Homo NON_SYNONYMOUS_CODING OsKitaake07g133900
SBS Chr8 529432 G-A Hetero INTERGENIC
SBS Chr8 8382673 A-T Hetero INTERGENIC
SBS Chr8 23734377 C-T Hetero INTERGENIC
SBS Chr9 12899331 G-T Hetero INTERGENIC
SBS Chr9 13554461 T-A Hetero INTERGENIC
SBS Chr9 18026953 T-C Hetero INTERGENIC
SBS Chr10 251955 T-G Hetero INTERGENIC
SBS Chr10 2487692 T-A Homo INTRON
SBS Chr10 2487693 T-A Homo INTRON
SBS Chr10 8191121 T-C Hetero INTERGENIC
SBS Chr10 9417290 C-A Hetero INTERGENIC
SBS Chr11 12541174 T-G Hetero INTERGENIC
SBS Chr11 13000098 C-T Hetero INTERGENIC
SBS Chr11 13339898 C-T Hetero INTERGENIC
SBS Chr11 16305969 G-A Hetero INTERGENIC
SBS Chr11 20846069 A-T Hetero INTERGENIC
SBS Chr12 3722498 G-A Homo INTRON
SBS Chr12 5836605 T-A Hetero INTERGENIC
SBS Chr12 6619284 C-T Hetero INTRON
SBS Chr12 8633327 C-T Hetero INTERGENIC
SBS Chr12 9133286 T-C Hetero INTERGENIC
SBS Chr12 13616838 C-T Hetero INTERGENIC
SBS Chr12 18876767 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156979 156981 2
Deletion Chr3 624737 624739 2
Deletion Chr11 4276771 4276782 11
Deletion Chr7 7150246 7150262 16
Deletion Chr10 7972001 8010000 37999 3
Deletion Chr12 9086125 9086131 6
Deletion Chr8 11075717 11075744 27
Deletion Chr11 11555772 11555791 19
Deletion Chr8 12338412 12338417 5
Deletion Chr9 13735827 13735829 2
Deletion Chr3 16133781 16133782 1
Deletion Chr1 16182927 16182930 3
Deletion Chr12 17577262 17577264 2
Deletion Chr7 18440248 18440249 1
Deletion Chr12 18800470 18800472 2
Deletion Chr9 20587001 20758000 170999 22
Deletion Chr9 20608652 20608658 6
Deletion Chr7 23446561 23446563 2
Deletion Chr12 26070795 26070797 2
Deletion Chr4 26457201 26457202 1
Deletion Chr11 26554243 26554246 3
Deletion Chr1 39711486 39711490 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23577975 23577978 2
Insertion Chr6 26764779 26764782 2
Insertion Chr10 13525053 13525057 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 23808300 24740299 2
Inversion Chr4 23808305 24740304 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 11977007 Chr4 29107564 OsKitaake04g220100
Translocation Chr8 11977375 Chr4 29107567 OsKitaake04g220100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1249860	T-G	Hetero	INTERGENIC
SBS	Chr1	1249909	T-C	Hetero	INTERGENIC
SBS	Chr1	13701453	C-T	Hetero	INTRON
SBS	Chr1	17104851	C-T	Hetero	INTERGENIC
SBS	Chr1	20951411	C-A	Hetero	INTERGENIC
SBS	Chr2	1965989	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	2209652	G-T	Hetero	INTRON
SBS	Chr2	4033708	T-A	Hetero	INTERGENIC
SBS	Chr2	4722354	T-A	Hetero	INTERGENIC
SBS	Chr2	8184285	T-G	Hetero	INTERGENIC
SBS	Chr2	32419520	G-T	Homo	INTERGENIC
SBS	Chr3	16849469	G-C	Hetero	INTERGENIC
SBS	Chr3	17578890	C-T	Hetero	INTERGENIC
SBS	Chr3	20202420	C-T	Hetero	INTERGENIC
SBS	Chr3	23380386	T-G	Hetero	INTERGENIC
SBS	Chr3	25716802	G-A	Hetero	INTERGENIC
SBS	Chr3	32554744	A-G	Homo	INTERGENIC
SBS	Chr4	3818019	T-C	Hetero	INTERGENIC
SBS	Chr4	3887492	G-A	Hetero	INTERGENIC
SBS	Chr4	4283523	A-G	Homo	INTERGENIC
SBS	Chr4	10514449	C-T	Hetero	INTERGENIC
SBS	Chr4	12296032	A-T	Homo	INTRON
SBS	Chr4	14481322	C-A	Hetero	INTERGENIC
SBS	Chr4	14722657	A-T	Homo	INTERGENIC
SBS	Chr4	15350050	T-A	Homo	INTERGENIC
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr4	24606188	A-T	Hetero	INTERGENIC
SBS	Chr4	25760619	C-T	Hetero	INTERGENIC
SBS	Chr4	32668579	C-T	Hetero	INTERGENIC
SBS	Chr4	34704779	A-T	Hetero	INTRON
SBS	Chr6	2673057	C-A	Hetero	INTERGENIC
SBS	Chr6	10465066	T-A	Hetero	INTERGENIC
SBS	Chr6	21138232	A-G	Hetero	INTERGENIC
SBS	Chr6	25213679	G-C	Hetero	INTERGENIC
SBS	Chr6	27675151	G-A	Homo	INTERGENIC
SBS	Chr6	27675152	C-A	Homo	INTERGENIC
SBS	Chr6	30234976	G-C	Hetero	INTERGENIC
SBS	Chr7	4138316	A-G	Homo	INTERGENIC
SBS	Chr7	6138627	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g072700
SBS	Chr7	7740915	C-T	Hetero	INTRON
SBS	Chr7	8665632	G-A	Hetero	INTERGENIC
SBS	Chr7	9729349	G-C	Hetero	INTERGENIC
SBS	Chr7	9847372	G-A	Hetero	INTERGENIC
SBS	Chr7	10343164	A-G	Hetero	INTERGENIC
SBS	Chr7	13064398	G-C	Hetero	INTERGENIC
SBS	Chr7	13755223	A-G	Hetero	INTERGENIC
SBS	Chr7	13819778	T-A	Hetero	INTERGENIC
SBS	Chr7	16151492	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g133900
SBS	Chr8	529432	G-A	Hetero	INTERGENIC
SBS	Chr8	8382673	A-T	Hetero	INTERGENIC
SBS	Chr8	23734377	C-T	Hetero	INTERGENIC
SBS	Chr9	12899331	G-T	Hetero	INTERGENIC
SBS	Chr9	13554461	T-A	Hetero	INTERGENIC
SBS	Chr9	18026953	T-C	Hetero	INTERGENIC
SBS	Chr10	251955	T-G	Hetero	INTERGENIC
SBS	Chr10	2487692	T-A	Homo	INTRON
SBS	Chr10	2487693	T-A	Homo	INTRON
SBS	Chr10	8191121	T-C	Hetero	INTERGENIC
SBS	Chr10	9417290	C-A	Hetero	INTERGENIC
SBS	Chr11	12541174	T-G	Hetero	INTERGENIC
SBS	Chr11	13000098	C-T	Hetero	INTERGENIC
SBS	Chr11	13339898	C-T	Hetero	INTERGENIC
SBS	Chr11	16305969	G-A	Hetero	INTERGENIC
SBS	Chr11	20846069	A-T	Hetero	INTERGENIC
SBS	Chr12	3722498	G-A	Homo	INTRON
SBS	Chr12	5836605	T-A	Hetero	INTERGENIC
SBS	Chr12	6619284	C-T	Hetero	INTRON
SBS	Chr12	8633327	C-T	Hetero	INTERGENIC
SBS	Chr12	9133286	T-C	Hetero	INTERGENIC
SBS	Chr12	13616838	C-T	Hetero	INTERGENIC
SBS	Chr12	18876767	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156979	156981	2
Deletion	Chr3	624737	624739	2
Deletion	Chr11	4276771	4276782	11
Deletion	Chr7	7150246	7150262	16
Deletion	Chr10	7972001	8010000	37999	3
Deletion	Chr12	9086125	9086131	6
Deletion	Chr8	11075717	11075744	27
Deletion	Chr11	11555772	11555791	19
Deletion	Chr8	12338412	12338417	5
Deletion	Chr9	13735827	13735829	2
Deletion	Chr3	16133781	16133782	1
Deletion	Chr1	16182927	16182930	3
Deletion	Chr12	17577262	17577264	2
Deletion	Chr7	18440248	18440249	1
Deletion	Chr12	18800470	18800472	2
Deletion	Chr9	20587001	20758000	170999	22
Deletion	Chr9	20608652	20608658	6
Deletion	Chr7	23446561	23446563	2
Deletion	Chr12	26070795	26070797	2
Deletion	Chr4	26457201	26457202	1
Deletion	Chr11	26554243	26554246	3
Deletion	Chr1	39711486	39711490	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	23808300	24740299	2
Inversion	Chr4	23808305	24740304	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes