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Mutant Information

Mutant Name	FN2379 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2379 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16756554 C-A Hetero INTERGENIC
SBS Chr1 17921350 C-T Hetero INTERGENIC
SBS Chr1 19991783 G-A Hetero INTERGENIC
SBS Chr1 27017165 A-G Hetero UTR_3_PRIME
SBS Chr2 4432500 T-G Homo INTRON
SBS Chr2 7233899 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 35017147 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g365900
SBS Chr3 3627542 C-T Hetero INTERGENIC
SBS Chr3 4930592 A-G Hetero INTERGENIC
SBS Chr3 7915464 C-A Hetero INTERGENIC
SBS Chr3 11232267 C-G Hetero INTRON
SBS Chr3 22729002 C-T Hetero INTERGENIC
SBS Chr3 27569502 T-G Homo INTERGENIC
SBS Chr4 244801 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g001300
SBS Chr4 685544 C-T Hetero UTR_3_PRIME
SBS Chr4 5583203 G-A Hetero INTERGENIC
SBS Chr5 7218231 G-A Hetero INTERGENIC
SBS Chr5 9506539 G-A Hetero INTERGENIC
SBS Chr5 15389418 C-T Hetero INTERGENIC
SBS Chr5 15654857 C-T Hetero INTERGENIC
SBS Chr5 29844921 A-G Homo START_GAINED
SBS Chr6 10109834 C-T Hetero INTRON
SBS Chr7 1270139 G-T Hetero INTRON
SBS Chr7 1987748 G-T Hetero INTRON
SBS Chr7 1987749 A-T Hetero INTRON
SBS Chr7 17713259 A-G Hetero INTRON
SBS Chr7 18574835 C-T Hetero INTERGENIC
SBS Chr7 22378729 G-A Hetero INTERGENIC
SBS Chr8 2690180 G-A Homo INTERGENIC
SBS Chr8 6716017 A-G Hetero INTERGENIC
SBS Chr9 4001072 C-T Homo INTERGENIC
SBS Chr9 21196102 A-G Hetero INTERGENIC
SBS Chr10 8920116 G-A Homo INTERGENIC
SBS Chr10 13283320 C-A Hetero INTERGENIC
SBS Chr11 220625 G-A Hetero UTR_5_PRIME
SBS Chr11 220629 C-A Hetero UTR_5_PRIME
SBS Chr11 220644 G-C Hetero UTR_5_PRIME
SBS Chr11 18003452 G-T Hetero INTERGENIC
SBS Chr11 18825529 T-G Hetero INTERGENIC
SBS Chr12 12078414 G-A Hetero INTERGENIC
SBS Chr12 23446197 C-T Hetero INTRON

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 231823 231830 7
Deletion Chr2 1283269 1283273 4
Deletion Chr7 2021388 2021394 6
Deletion Chr6 4908830 4908845 15
Deletion Chr3 5084835 5084836 1
Deletion Chr4 6889593 6889597 4
Deletion Chr3 12099761 12099785 24
Deletion Chr12 15663067 15663092 25 OsKitaake12g121200
Deletion Chr8 17184892 17184893 1
Deletion Chr3 17584327 17584333 6
Deletion Chr12 17668759 17668766 7
Deletion Chr6 21937428 21937438 10 OsKitaake06g193100
Deletion Chr10 22472466 22472472 6
Deletion Chr3 22772928 22772930 2
Deletion Chr2 23005168 23005170 2
Deletion Chr6 24965823 24965829 6
Deletion Chr7 26247975 26247977 2
Deletion Chr1 30832001 31525000 692999 110
Deletion Chr1 31524782 31524783 1
Deletion Chr2 31632728 31632739 11
Deletion Chr1 34578093 34578094 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 29644383 29644386 2
Insertion Chr5 2039523 2039525 1
Insertion Chr5 13883899 13883902 2
Insertion Chr9 7561758 7561761 2
Insertion Chr12 12131658 12131662 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16756554	C-A	Hetero	INTERGENIC
SBS	Chr1	17921350	C-T	Hetero	INTERGENIC
SBS	Chr1	19991783	G-A	Hetero	INTERGENIC
SBS	Chr1	27017165	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	4432500	T-G	Homo	INTRON
SBS	Chr2	7233899	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	35017147	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g365900
SBS	Chr3	3627542	C-T	Hetero	INTERGENIC
SBS	Chr3	4930592	A-G	Hetero	INTERGENIC
SBS	Chr3	7915464	C-A	Hetero	INTERGENIC
SBS	Chr3	11232267	C-G	Hetero	INTRON
SBS	Chr3	22729002	C-T	Hetero	INTERGENIC
SBS	Chr3	27569502	T-G	Homo	INTERGENIC
SBS	Chr4	244801	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g001300
SBS	Chr4	685544	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	5583203	G-A	Hetero	INTERGENIC
SBS	Chr5	7218231	G-A	Hetero	INTERGENIC
SBS	Chr5	9506539	G-A	Hetero	INTERGENIC
SBS	Chr5	15389418	C-T	Hetero	INTERGENIC
SBS	Chr5	15654857	C-T	Hetero	INTERGENIC
SBS	Chr5	29844921	A-G	Homo	START_GAINED
SBS	Chr6	10109834	C-T	Hetero	INTRON
SBS	Chr7	1270139	G-T	Hetero	INTRON
SBS	Chr7	1987748	G-T	Hetero	INTRON
SBS	Chr7	1987749	A-T	Hetero	INTRON
SBS	Chr7	17713259	A-G	Hetero	INTRON
SBS	Chr7	18574835	C-T	Hetero	INTERGENIC
SBS	Chr7	22378729	G-A	Hetero	INTERGENIC
SBS	Chr8	2690180	G-A	Homo	INTERGENIC
SBS	Chr8	6716017	A-G	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Homo	INTERGENIC
SBS	Chr9	21196102	A-G	Hetero	INTERGENIC
SBS	Chr10	8920116	G-A	Homo	INTERGENIC
SBS	Chr10	13283320	C-A	Hetero	INTERGENIC
SBS	Chr11	220625	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	220629	C-A	Hetero	UTR_5_PRIME
SBS	Chr11	220644	G-C	Hetero	UTR_5_PRIME
SBS	Chr11	18003452	G-T	Hetero	INTERGENIC
SBS	Chr11	18825529	T-G	Hetero	INTERGENIC
SBS	Chr12	12078414	G-A	Hetero	INTERGENIC
SBS	Chr12	23446197	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	231823	231830	7
Deletion	Chr2	1283269	1283273	4
Deletion	Chr7	2021388	2021394	6
Deletion	Chr6	4908830	4908845	15
Deletion	Chr3	5084835	5084836	1
Deletion	Chr4	6889593	6889597	4
Deletion	Chr3	12099761	12099785	24
Deletion	Chr12	15663067	15663092	25	OsKitaake12g121200
Deletion	Chr8	17184892	17184893	1
Deletion	Chr3	17584327	17584333	6
Deletion	Chr12	17668759	17668766	7
Deletion	Chr6	21937428	21937438	10	OsKitaake06g193100
Deletion	Chr10	22472466	22472472	6
Deletion	Chr3	22772928	22772930	2
Deletion	Chr2	23005168	23005170	2
Deletion	Chr6	24965823	24965829	6
Deletion	Chr7	26247975	26247977	2
Deletion	Chr1	30832001	31525000	692999	110
Deletion	Chr1	31524782	31524783	1
Deletion	Chr2	31632728	31632739	11
Deletion	Chr1	34578093	34578094	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes